Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
ERCC3P19447 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ERCC3P19447 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC16.28■□□□□ 0.2
ERCC3P19447 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC16.28■□□□□ 0.2
ERCC3P19447 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
ERCC3P19447 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
ERCC3P19447 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ERCC3P19447 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
ERCC3P19447 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC16.28■□□□□ 0.2
ERCC3P19447 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
ERCC3P19447 IGLC1-201ENST00000390321 460 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
ERCC3P19447 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC16.28■□□□□ 0.2
ERCC3P19447 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
ERCC3P19447 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
ERCC3P19447 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ERCC3P19447 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC16.28■□□□□ 0.2
ERCC3P19447 HINT1-205ENST00000508488 703 ntTSL 2 BASIC16.28■□□□□ 0.2
ERCC3P19447 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
ERCC3P19447 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC16.28■□□□□ 0.2
ERCC3P19447 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
ERCC3P19447 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC16.28■□□□□ 0.2
ERCC3P19447 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC16.28■□□□□ 0.2
ERCC3P19447 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC16.28■□□□□ 0.2
ERCC3P19447 NOP16-211ENST00000621444 954 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ERCC3P19447 AC073592.2-201ENST00000623062 780 ntBASIC16.28■□□□□ 0.2
ERCC3P19447 ST5-261ENST00000626808 1071 ntTSL 5 BASIC16.28■□□□□ 0.2
ERCC3P19447 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC16.28■□□□□ 0.2
ERCC3P19447 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ERCC3P19447 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ERCC3P19447 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ERCC3P19447 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
ERCC3P19447 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ERCC3P19447 GSN-209ENST00000449733 2702 ntTSL 2 BASIC16.28■□□□□ 0.2
ERCC3P19447 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
ERCC3P19447 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC16.28■□□□□ 0.2
ERCC3P19447 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC16.28■□□□□ 0.2
ERCC3P19447 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ERCC3P19447 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
ERCC3P19447 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
ERCC3P19447 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ERCC3P19447 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
ERCC3P19447 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ERCC3P19447 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
ERCC3P19447 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC16.28■□□□□ 0.2
ERCC3P19447 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ERCC3P19447 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ERCC3P19447 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
ERCC3P19447 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC16.27■□□□□ 0.2
ERCC3P19447 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
ERCC3P19447 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC16.27■□□□□ 0.2
ERCC3P19447 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ERCC3P19447 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC16.27■□□□□ 0.2
ERCC3P19447 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ERCC3P19447 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC16.27■□□□□ 0.2
ERCC3P19447 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC16.27■□□□□ 0.2
ERCC3P19447 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ERCC3P19447 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ERCC3P19447 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ERCC3P19447 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
ERCC3P19447 RNVU1-8-201ENST00000364272 125 ntBASIC16.27■□□□□ 0.2
ERCC3P19447 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
ERCC3P19447 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC16.27■□□□□ 0.2
ERCC3P19447 PSMD4P1-201ENST00000433951 1109 ntBASIC16.27■□□□□ 0.2
ERCC3P19447 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC16.27■□□□□ 0.2
ERCC3P19447 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC16.27■□□□□ 0.2
ERCC3P19447 RN7SL23P-201ENST00000484055 275 ntBASIC16.27■□□□□ 0.2
ERCC3P19447 RN7SL767P-201ENST00000493013 295 ntBASIC16.27■□□□□ 0.2
ERCC3P19447 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC16.27■□□□□ 0.2
ERCC3P19447 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC16.27■□□□□ 0.2
ERCC3P19447 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
ERCC3P19447 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC16.27■□□□□ 0.2
ERCC3P19447 KRT8P2-201ENST00000556193 944 ntBASIC16.27■□□□□ 0.2
ERCC3P19447 GAS7-216ENST00000583882 553 ntTSL 5 BASIC16.27■□□□□ 0.2
ERCC3P19447 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC16.27■□□□□ 0.2
ERCC3P19447 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC16.27■□□□□ 0.2
ERCC3P19447 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ERCC3P19447 NAMA-206ENST00000605377 509 ntTSL 5 BASIC16.27■□□□□ 0.2
ERCC3P19447 MIR6074-201ENST00000612054 107 ntBASIC16.27■□□□□ 0.2
ERCC3P19447 HELLS-212ENST00000630929 400 ntTSL 5 BASIC16.27■□□□□ 0.2
ERCC3P19447 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
ERCC3P19447 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
ERCC3P19447 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
ERCC3P19447 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC16.27■□□□□ 0.19
ERCC3P19447 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
ERCC3P19447 HSPA7-201ENST00000445535 1927 ntBASIC16.27■□□□□ 0.19
ERCC3P19447 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
ERCC3P19447 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
ERCC3P19447 LINC00926-202ENST00000502027 2141 ntTSL 2 BASIC16.27■□□□□ 0.19
ERCC3P19447 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.19
ERCC3P19447 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC16.27■□□□□ 0.19
ERCC3P19447 ADK-205ENST00000539909 1866 ntTSL 2 BASIC16.27■□□□□ 0.19
ERCC3P19447 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ERCC3P19447 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ERCC3P19447 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ERCC3P19447 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ERCC3P19447 AC152010.1-201ENST00000415779 2006 ntBASIC16.26■□□□□ 0.19
ERCC3P19447 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC16.26■□□□□ 0.19
ERCC3P19447 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC16.26■□□□□ 0.19
ERCC3P19447 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC16.26■□□□□ 0.19
ERCC3P19447 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 67.8 ms