Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 YPEL4-201ENST00000300022 1721 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HLA-CQ95604 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HLA-CQ95604 NR1H4-203ENST00000392986 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HLA-CQ95604 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC14.29□□□□□ -0.12
HLA-CQ95604 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HLA-CQ95604 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HLA-CQ95604 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HLA-CQ95604 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
HLA-CQ95604 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HLA-CQ95604 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC14.29□□□□□ -0.12
HLA-CQ95604 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
HLA-CQ95604 EDF1-201ENST00000224073 640 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HLA-CQ95604 SGCA-202ENST00000344627 1057 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HLA-CQ95604 MIR766-201ENST00000390223 111 ntBASIC14.29□□□□□ -0.12
HLA-CQ95604 KRTAP12-1-201ENST00000391617 588 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
HLA-CQ95604 GSG1L2-201ENST00000399363 882 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
HLA-CQ95604 KDM5C-IT1-201ENST00000412242 755 ntTSL 5 BASIC14.29□□□□□ -0.12
HLA-CQ95604 RPSAP61-201ENST00000412542 878 ntBASIC14.29□□□□□ -0.12
HLA-CQ95604 AP000959.1-201ENST00000441759 977 ntTSL 3 BASIC14.29□□□□□ -0.12
HLA-CQ95604 RPSAP16-201ENST00000447583 821 ntBASIC14.29□□□□□ -0.12
HLA-CQ95604 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC14.29□□□□□ -0.12
HLA-CQ95604 RMDN1-218ENST00000523911 950 ntTSL 2 BASIC14.29□□□□□ -0.12
HLA-CQ95604 AC027682.3-201ENST00000564717 207 ntTSL 5 BASIC14.29□□□□□ -0.12
HLA-CQ95604 BMS1P8-203ENST00000567036 614 ntTSL 3 BASIC14.29□□□□□ -0.12
HLA-CQ95604 Metazoa_SRP.147-201ENST00000576563 312 ntBASIC14.29□□□□□ -0.12
HLA-CQ95604 AC048380.1-201ENST00000589818 465 ntTSL 3 BASIC14.29□□□□□ -0.12
HLA-CQ95604 AC087821.1-201ENST00000623639 567 ntBASIC14.29□□□□□ -0.12
HLA-CQ95604 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HLA-CQ95604 CICP6-201ENST00000457191 2729 ntBASIC14.29□□□□□ -0.12
HLA-CQ95604 TCL1A-201ENST00000402399 1395 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HLA-CQ95604 LINC02433-202ENST00000507108 1395 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HLA-CQ95604 AC106872.9-201ENST00000512437 1393 ntBASIC14.29□□□□□ -0.12
HLA-CQ95604 ARRDC5-201ENST00000381781 1638 ntAPPRIS P1 TSL 3 BASIC14.29□□□□□ -0.12
HLA-CQ95604 DNAJB6-204ENST00000429029 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HLA-CQ95604 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HLA-CQ95604 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HLA-CQ95604 RUSC1-AS1-202ENST00000446880 1836 ntTSL 2 BASIC14.29□□□□□ -0.12
HLA-CQ95604 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HLA-CQ95604 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
HLA-CQ95604 CREB5-202ENST00000396298 2001 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HLA-CQ95604 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HLA-CQ95604 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
HLA-CQ95604 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HLA-CQ95604 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
HLA-CQ95604 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
HLA-CQ95604 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC14.28□□□□□ -0.12
HLA-CQ95604 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
HLA-CQ95604 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HLA-CQ95604 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC14.28□□□□□ -0.12
HLA-CQ95604 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HLA-CQ95604 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HLA-CQ95604 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HLA-CQ95604 FAM25A-201ENST00000343959 345 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HLA-CQ95604 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HLA-CQ95604 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC14.28□□□□□ -0.12
HLA-CQ95604 RPL15-205ENST00000415719 830 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
HLA-CQ95604 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HLA-CQ95604 AC105443.1-201ENST00000433754 712 ntBASIC14.28□□□□□ -0.12
HLA-CQ95604 LINC00571-201ENST00000434565 521 ntTSL 3 BASIC14.28□□□□□ -0.12
HLA-CQ95604 PTPA-219ENST00000435305 530 ntTSL 2 BASIC14.28□□□□□ -0.12
HLA-CQ95604 CNBP-202ENST00000441626 1040 ntTSL 2 BASIC14.28□□□□□ -0.12
HLA-CQ95604 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HLA-CQ95604 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HLA-CQ95604 PUF60-204ENST00000456095 1736 ntTSL 5 BASIC14.28□□□□□ -0.12
HLA-CQ95604 AC055748.1-201ENST00000489836 959 ntBASIC14.28□□□□□ -0.12
HLA-CQ95604 MYCBP-203ENST00000494695 750 ntTSL 2 BASIC14.28□□□□□ -0.12
HLA-CQ95604 AC068858.1-201ENST00000525114 1239 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HLA-CQ95604 AC090709.1-201ENST00000548384 716 ntTSL 3 BASIC14.28□□□□□ -0.12
HLA-CQ95604 RBFOX1-214ENST00000552089 1430 ntTSL 5 BASIC14.28□□□□□ -0.12
HLA-CQ95604 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC14.28□□□□□ -0.12
HLA-CQ95604 LINC01477-201ENST00000566101 1226 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HLA-CQ95604 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
HLA-CQ95604 RN7SL134P-201ENST00000579756 303 ntBASIC14.28□□□□□ -0.12
HLA-CQ95604 AC023509.3-202ENST00000591834 1609 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
HLA-CQ95604 USP39-220ENST00000613444 2161 ntTSL 2 BASIC14.28□□□□□ -0.12
HLA-CQ95604 PACRG-AS3-204ENST00000620150 567 ntTSL 4 BASIC14.28□□□□□ -0.12
HLA-CQ95604 AC015813.5-201ENST00000624641 1514 ntBASIC14.28□□□□□ -0.12
HLA-CQ95604 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HLA-CQ95604 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HLA-CQ95604 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
HLA-CQ95604 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
HLA-CQ95604 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HLA-CQ95604 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HLA-CQ95604 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HLA-CQ95604 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC14.28□□□□□ -0.12
HLA-CQ95604 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
HLA-CQ95604 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
HLA-CQ95604 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
HLA-CQ95604 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
HLA-CQ95604 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
HLA-CQ95604 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HLA-CQ95604 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HLA-CQ95604 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.12
HLA-CQ95604 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC14.27□□□□□ -0.12
HLA-CQ95604 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC14.27□□□□□ -0.12
HLA-CQ95604 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HLA-CQ95604 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
HLA-CQ95604 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
HLA-CQ95604 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC14.27□□□□□ -0.12
HLA-CQ95604 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC14.27□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms