Protein–RNA interactions for Protein: P56880

CLDN20, Claudin-20, humanhuman

Predictions only

Length 219 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN20P56880 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
CLDN20P56880 LINC00940-201ENST00000418006 2350 ntTSL 2 BASIC12.96□□□□□ -0.33
CLDN20P56880 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
CLDN20P56880 COX6B2-210ENST00000593184 2083 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
CLDN20P56880 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.34
CLDN20P56880 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.34
CLDN20P56880 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.34
CLDN20P56880 LRSAM1-201ENST00000300417 3146 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
CLDN20P56880 SH2D3C-201ENST00000314830 3124 ntAPPRIS P4 TSL 1 (best) BASIC12.96□□□□□ -0.34
CLDN20P56880 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC12.96□□□□□ -0.34
CLDN20P56880 DDC-207ENST00000444124 2041 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
CLDN20P56880 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
CLDN20P56880 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC12.96□□□□□ -0.34
CLDN20P56880 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC12.96□□□□□ -0.34
CLDN20P56880 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
CLDN20P56880 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC12.96□□□□□ -0.34
CLDN20P56880 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC12.96□□□□□ -0.34
CLDN20P56880 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
CLDN20P56880 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC12.96□□□□□ -0.34
CLDN20P56880 IFT57-201ENST00000264538 3203 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
CLDN20P56880 NLRP7-207ENST00000590030 3209 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
CLDN20P56880 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.34
CLDN20P56880 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC12.96□□□□□ -0.34
CLDN20P56880 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
CLDN20P56880 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC12.96□□□□□ -0.34
CLDN20P56880 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLDN20P56880 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLDN20P56880 SNX12-202ENST00000374274 2376 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLDN20P56880 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLDN20P56880 SRPRB-201ENST00000466490 2827 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
CLDN20P56880 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLDN20P56880 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLDN20P56880 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLDN20P56880 NLGN3-201ENST00000358741 3046 ntAPPRIS P4 TSL 5 BASIC12.95□□□□□ -0.34
CLDN20P56880 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLDN20P56880 MAP7-201ENST00000354570 4152 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLDN20P56880 SLC16A1-201ENST00000369626 3910 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLDN20P56880 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLDN20P56880 AC015909.3-201ENST00000572855 1794 ntBASIC12.95□□□□□ -0.34
CLDN20P56880 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
CLDN20P56880 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLDN20P56880 USP49-201ENST00000373006 3177 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CLDN20P56880 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
CLDN20P56880 GEM-201ENST00000297596 2208 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLDN20P56880 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLDN20P56880 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC12.95□□□□□ -0.34
CLDN20P56880 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLDN20P56880 AL662890.1-201ENST00000396818 632 ntBASIC12.95□□□□□ -0.34
CLDN20P56880 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLDN20P56880 AC092580.1-201ENST00000433998 658 ntBASIC12.95□□□□□ -0.34
CLDN20P56880 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC12.95□□□□□ -0.34
CLDN20P56880 AC073150.1-201ENST00000450406 1084 ntBASIC12.95□□□□□ -0.34
CLDN20P56880 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC12.95□□□□□ -0.34
CLDN20P56880 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC12.95□□□□□ -0.34
CLDN20P56880 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC12.95□□□□□ -0.34
CLDN20P56880 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC12.95□□□□□ -0.34
CLDN20P56880 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CLDN20P56880 AL161670.2-201ENST00000557650 1227 ntBASIC12.95□□□□□ -0.34
CLDN20P56880 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC12.95□□□□□ -0.34
CLDN20P56880 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC12.95□□□□□ -0.34
CLDN20P56880 CU633904.3-201ENST00000624042 1029 ntBASIC12.95□□□□□ -0.34
CLDN20P56880 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC12.95□□□□□ -0.34
CLDN20P56880 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLDN20P56880 LINC01833-203ENST00000437916 2880 ntTSL 3 BASIC12.95□□□□□ -0.34
CLDN20P56880 TXNDC12-201ENST00000371626 2396 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLDN20P56880 FNTB-201ENST00000246166 2834 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLDN20P56880 LGALS9-201ENST00000302228 3018 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLDN20P56880 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
CLDN20P56880 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC12.95□□□□□ -0.34
CLDN20P56880 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC12.95□□□□□ -0.34
CLDN20P56880 PELP1-201ENST00000301396 3673 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLDN20P56880 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC12.95□□□□□ -0.34
CLDN20P56880 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLDN20P56880 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC12.95□□□□□ -0.34
CLDN20P56880 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLDN20P56880 MKRN1-201ENST00000255977 3151 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLDN20P56880 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLDN20P56880 RBM6-211ENST00000443081 4010 ntTSL 5 BASIC12.95□□□□□ -0.34
CLDN20P56880 FUT1-201ENST00000310160 4246 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
CLDN20P56880 STXBP1-201ENST00000373299 3765 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLDN20P56880 TRIM69-206ENST00000559390 2486 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
CLDN20P56880 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CLDN20P56880 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC12.95□□□□□ -0.34
CLDN20P56880 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CLDN20P56880 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
CLDN20P56880 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CLDN20P56880 BCKDHB-201ENST00000320393 3692 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CLDN20P56880 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CLDN20P56880 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CLDN20P56880 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
CLDN20P56880 GRIN1-207ENST00000371560 3640 ntAPPRIS ALT1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CLDN20P56880 FUBP1-203ENST00000370768 2378 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CLDN20P56880 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC12.94□□□□□ -0.34
CLDN20P56880 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
CLDN20P56880 FRMPD2B-201ENST00000431305 1347 ntBASIC12.94□□□□□ -0.34
CLDN20P56880 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CLDN20P56880 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC12.94□□□□□ -0.34
CLDN20P56880 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CLDN20P56880 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CLDN20P56880 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC12.94□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms