Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
BDNFP23560 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
BDNFP23560 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
BDNFP23560 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
BDNFP23560 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
BDNFP23560 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
BDNFP23560 PPARG-205ENST00000397010 2017 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
BDNFP23560 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
BDNFP23560 GOLGA8IP-202ENST00000611635 2100 ntBASIC14.8□□□□□ -0.04
BDNFP23560 AC015909.5-201ENST00000624336 2266 ntBASIC14.8□□□□□ -0.04
BDNFP23560 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
BDNFP23560 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
BDNFP23560 AL928921.2-201ENST00000641325 2442 ntBASIC14.8□□□□□ -0.04
BDNFP23560 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
BDNFP23560 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
BDNFP23560 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC14.79□□□□□ -0.04
BDNFP23560 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
BDNFP23560 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
BDNFP23560 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
BDNFP23560 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC14.79□□□□□ -0.04
BDNFP23560 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
BDNFP23560 SS18-201ENST00000269137 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
BDNFP23560 EIF3F-201ENST00000309828 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
BDNFP23560 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
BDNFP23560 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
BDNFP23560 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
BDNFP23560 PIGV-202ENST00000374145 2713 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
BDNFP23560 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC14.79□□□□□ -0.04
BDNFP23560 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
BDNFP23560 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
BDNFP23560 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
BDNFP23560 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC14.79□□□□□ -0.04
BDNFP23560 AC092573.1-201ENST00000433054 884 ntBASIC14.79□□□□□ -0.04
BDNFP23560 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
BDNFP23560 ALKBH2-203ENST00000440112 574 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
BDNFP23560 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC14.79□□□□□ -0.04
BDNFP23560 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
BDNFP23560 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC14.79□□□□□ -0.04
BDNFP23560 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC14.79□□□□□ -0.04
BDNFP23560 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC14.79□□□□□ -0.04
BDNFP23560 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC14.79□□□□□ -0.04
BDNFP23560 AC008620.2-201ENST00000510294 1569 ntBASIC14.79□□□□□ -0.04
BDNFP23560 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC14.79□□□□□ -0.04
BDNFP23560 CFL1-206ENST00000527344 962 ntTSL 2 BASIC14.79□□□□□ -0.04
BDNFP23560 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC14.79□□□□□ -0.04
BDNFP23560 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC14.79□□□□□ -0.04
BDNFP23560 AC068867.1-201ENST00000559855 150 ntBASIC14.79□□□□□ -0.04
BDNFP23560 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC14.79□□□□□ -0.04
BDNFP23560 AL031673.1-201ENST00000611460 466 ntBASIC14.79□□□□□ -0.04
BDNFP23560 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
BDNFP23560 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
BDNFP23560 AC092978.1-202ENST00000637590 1327 ntBASIC14.79□□□□□ -0.04
BDNFP23560 SLC37A3-201ENST00000326232 3349 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
BDNFP23560 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
BDNFP23560 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
BDNFP23560 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
BDNFP23560 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
BDNFP23560 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
BDNFP23560 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
BDNFP23560 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
BDNFP23560 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC14.79□□□□□ -0.04
BDNFP23560 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
BDNFP23560 AC111170.3-201ENST00000624282 2464 ntBASIC14.78□□□□□ -0.04
BDNFP23560 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
BDNFP23560 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC14.78□□□□□ -0.04
BDNFP23560 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
BDNFP23560 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
BDNFP23560 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC14.78□□□□□ -0.04
BDNFP23560 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC14.78□□□□□ -0.04
BDNFP23560 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
BDNFP23560 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC14.78□□□□□ -0.04
BDNFP23560 AL365181.3-201ENST00000605886 3222 ntBASIC14.78□□□□□ -0.04
BDNFP23560 TOR1AIP1-201ENST00000271583 3044 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
BDNFP23560 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC14.78□□□□□ -0.04
BDNFP23560 SALL2-205ENST00000611430 1466 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
BDNFP23560 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
BDNFP23560 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC14.78□□□□□ -0.04
BDNFP23560 MSANTD2P1-201ENST00000445341 1368 ntBASIC14.78□□□□□ -0.04
BDNFP23560 GON7-201ENST00000306954 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
BDNFP23560 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
BDNFP23560 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
BDNFP23560 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
BDNFP23560 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
BDNFP23560 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC14.78□□□□□ -0.04
BDNFP23560 PDCD5-202ENST00000379316 154 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
BDNFP23560 IGF1-203ENST00000392904 761 ntTSL 5 BASIC14.78□□□□□ -0.04
BDNFP23560 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
BDNFP23560 RPL3P2-204ENST00000413027 1203 ntBASIC14.78□□□□□ -0.04
BDNFP23560 CSNK1G2P1-201ENST00000442675 955 ntBASIC14.78□□□□□ -0.04
BDNFP23560 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC14.78□□□□□ -0.04
BDNFP23560 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
BDNFP23560 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
BDNFP23560 RN7SL767P-201ENST00000493013 295 ntBASIC14.78□□□□□ -0.04
BDNFP23560 HINT1-205ENST00000508488 703 ntTSL 2 BASIC14.78□□□□□ -0.04
BDNFP23560 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC14.78□□□□□ -0.04
BDNFP23560 SNORD3B-1-201ENST00000577988 758 ntBASIC14.78□□□□□ -0.04
BDNFP23560 RN7SL357P-201ENST00000581065 298 ntBASIC14.78□□□□□ -0.04
BDNFP23560 MIR4649-201ENST00000582839 64 ntBASIC14.78□□□□□ -0.04
BDNFP23560 NAT9-224ENST00000583757 583 ntTSL 3 BASIC14.78□□□□□ -0.04
BDNFP23560 PDCD5-208ENST00000592786 468 ntTSL 3 BASIC14.78□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms