Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 AC003986.1-201ENST00000452700 1526 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HDAC4P56524 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
HDAC4P56524 NCLP1-201ENST00000445357 1963 ntBASIC14.74□□□□□ -0.05
HDAC4P56524 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC14.74□□□□□ -0.05
HDAC4P56524 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
HDAC4P56524 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
HDAC4P56524 STAB1-201ENST00000321725 7928 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HDAC4P56524 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC14.74□□□□□ -0.05
HDAC4P56524 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC14.74□□□□□ -0.05
HDAC4P56524 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HDAC4P56524 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
HDAC4P56524 STRA6-202ENST00000395105 2800 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HDAC4P56524 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HDAC4P56524 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HDAC4P56524 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HDAC4P56524 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC14.73□□□□□ -0.05
HDAC4P56524 AC008132.1-202ENST00000342005 1389 ntBASIC14.73□□□□□ -0.05
HDAC4P56524 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HDAC4P56524 PPT1-203ENST00000433473 2267 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HDAC4P56524 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
HDAC4P56524 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
HDAC4P56524 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC14.73□□□□□ -0.05
HDAC4P56524 KAT7-204ENST00000454930 1774 ntTSL 2 BASIC14.73□□□□□ -0.05
HDAC4P56524 OR6F1-204ENST00000641470 1762 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
HDAC4P56524 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
HDAC4P56524 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HDAC4P56524 SMTN-201ENST00000333137 3295 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
HDAC4P56524 TRIO-202ENST00000344204 11100 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HDAC4P56524 CATSPERE-202ENST00000366533 3019 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
HDAC4P56524 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HDAC4P56524 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
HDAC4P56524 KRT17P5-201ENST00000332088 839 ntBASIC14.73□□□□□ -0.05
HDAC4P56524 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
HDAC4P56524 MBP-201ENST00000354542 575 ntTSL 2 BASIC14.73□□□□□ -0.05
HDAC4P56524 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC14.73□□□□□ -0.05
HDAC4P56524 AC005740.1-201ENST00000515639 522 ntBASIC14.73□□□□□ -0.05
HDAC4P56524 CMC2-204ENST00000562713 573 ntTSL 3 BASIC14.73□□□□□ -0.05
HDAC4P56524 CMC2-209ENST00000565108 399 ntTSL 2 BASIC14.73□□□□□ -0.05
HDAC4P56524 MIR6787-201ENST00000616675 61 ntBASIC14.73□□□□□ -0.05
HDAC4P56524 CR392039.2-201ENST00000623182 509 ntBASIC14.73□□□□□ -0.05
HDAC4P56524 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HDAC4P56524 VIPR1-202ENST00000433647 3161 ntTSL 2 BASIC14.73□□□□□ -0.05
HDAC4P56524 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
HDAC4P56524 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HDAC4P56524 PIGV-202ENST00000374145 2713 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
HDAC4P56524 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC14.73□□□□□ -0.05
HDAC4P56524 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
HDAC4P56524 MEGF8-201ENST00000251268 9549 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
HDAC4P56524 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
HDAC4P56524 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
HDAC4P56524 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HDAC4P56524 DDC-207ENST00000444124 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HDAC4P56524 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
HDAC4P56524 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
HDAC4P56524 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
HDAC4P56524 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HDAC4P56524 AL356585.2-201ENST00000625078 2396 ntBASIC14.73□□□□□ -0.05
HDAC4P56524 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HDAC4P56524 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HDAC4P56524 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC14.73□□□□□ -0.05
HDAC4P56524 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
HDAC4P56524 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC14.72□□□□□ -0.05
HDAC4P56524 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HDAC4P56524 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC14.72□□□□□ -0.05
HDAC4P56524 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
HDAC4P56524 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
HDAC4P56524 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HDAC4P56524 SARS-202ENST00000369923 1882 ntTSL 5 BASIC14.72□□□□□ -0.05
HDAC4P56524 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
HDAC4P56524 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
HDAC4P56524 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HDAC4P56524 AC099521.3-201ENST00000624251 2938 ntBASIC14.72□□□□□ -0.05
HDAC4P56524 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HDAC4P56524 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HDAC4P56524 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC14.72□□□□□ -0.05
HDAC4P56524 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC14.72□□□□□ -0.05
HDAC4P56524 AC073150.1-201ENST00000450406 1084 ntBASIC14.72□□□□□ -0.05
HDAC4P56524 ALG1L13P-202ENST00000519320 584 ntBASIC14.72□□□□□ -0.05
HDAC4P56524 ACTG1P17-201ENST00000558391 1119 ntBASIC14.72□□□□□ -0.05
HDAC4P56524 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC14.72□□□□□ -0.05
HDAC4P56524 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC14.72□□□□□ -0.05
HDAC4P56524 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC14.72□□□□□ -0.05
HDAC4P56524 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC14.72□□□□□ -0.05
HDAC4P56524 AP1G2-201ENST00000308724 3298 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HDAC4P56524 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HDAC4P56524 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HDAC4P56524 PDE2A-203ENST00000418754 2855 ntTSL 2 BASIC14.72□□□□□ -0.05
HDAC4P56524 MTF2-202ENST00000370303 1951 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HDAC4P56524 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HDAC4P56524 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC14.72□□□□□ -0.05
HDAC4P56524 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HDAC4P56524 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HDAC4P56524 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
HDAC4P56524 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
HDAC4P56524 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HDAC4P56524 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
HDAC4P56524 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC14.72□□□□□ -0.05
HDAC4P56524 CA12-201ENST00000178638 6413 ntAPPRIS P4 TSL 1 (best) BASIC14.72□□□□□ -0.05
HDAC4P56524 GRIP2-204ENST00000619221 7977 ntAPPRIS P5 TSL 5 BASIC14.72□□□□□ -0.05
HDAC4P56524 MARK2P9-201ENST00000430958 1727 ntBASIC14.72□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms