Protein–RNA interactions for Protein: Q9BXY4

RSPO3, R-spondin-3, humanhuman

Predicted RBP Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RSPO3Q9BXY4 AC104306.2-201ENST00000451877 341 ntBASIC12.86□□□□□ -0.35
RSPO3Q9BXY4 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC12.86□□□□□ -0.35
RSPO3Q9BXY4 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
RSPO3Q9BXY4 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
RSPO3Q9BXY4 AC113935.1-201ENST00000471722 555 ntBASIC12.86□□□□□ -0.35
RSPO3Q9BXY4 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC12.86□□□□□ -0.35
RSPO3Q9BXY4 ALG1L13P-202ENST00000519320 584 ntBASIC12.86□□□□□ -0.35
RSPO3Q9BXY4 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC12.86□□□□□ -0.35
RSPO3Q9BXY4 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC12.86□□□□□ -0.35
RSPO3Q9BXY4 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC12.86□□□□□ -0.35
RSPO3Q9BXY4 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC12.86□□□□□ -0.35
RSPO3Q9BXY4 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC12.86□□□□□ -0.35
RSPO3Q9BXY4 AL645939.5-201ENST00000606834 243 ntBASIC12.86□□□□□ -0.35
RSPO3Q9BXY4 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC12.86□□□□□ -0.35
RSPO3Q9BXY4 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
RSPO3Q9BXY4 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC12.86□□□□□ -0.35
RSPO3Q9BXY4 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
RSPO3Q9BXY4 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
RSPO3Q9BXY4 DNAJC30-201ENST00000395176 2485 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
RSPO3Q9BXY4 H3F3B-201ENST00000254810 2705 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
RSPO3Q9BXY4 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
RSPO3Q9BXY4 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
RSPO3Q9BXY4 ZFYVE19-215ENST00000570108 1669 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
RSPO3Q9BXY4 ZSCAN32-202ENST00000396846 3173 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 MGAT1-205ENST00000446023 3175 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 ALKBH1-201ENST00000216489 2594 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 SCNN1B-202ENST00000343070 2597 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 GPR107-208ENST00000610997 2813 ntTSL 5 BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 TTC39B-201ENST00000297615 3053 ntAPPRIS ALT2 TSL 2 BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 VMP1-201ENST00000262291 2712 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 PTH2R-201ENST00000272847 2713 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 DNAJA4-203ENST00000394855 3245 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 JOSD1-201ENST00000216039 3648 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 TGM3-201ENST00000381458 2642 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 RC3H2-205ENST00000423239 3623 ntTSL 5 BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 NR4A2-209ENST00000426264 2642 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 CDK20-209ENST00000605159 1860 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 TAPBP-234ENST00000434618 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 KIF3A-201ENST00000378735 3266 ntAPPRIS ALT1 TSL 1 (best) BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 CDC14B-201ENST00000375240 2547 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 CDC42-202ENST00000344548 2256 ntAPPRIS ALT1 TSL 1 (best) BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 PTPA-218ENST00000435132 618 ntTSL 2 BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 ATP5G2P4-201ENST00000442175 420 ntBASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 AC005740.2-201ENST00000511085 419 ntBASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 ZNF767P-206ENST00000513792 565 ntBASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 AC015967.2-201ENST00000624092 234 ntBASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 AC006435.4-201ENST00000625037 234 ntBASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 AL356737.1-201ENST00000634391 234 ntBASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 AL033527.4-201ENST00000641026 673 ntBASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 AL139424.3-202ENST00000641619 917 ntBASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 GPATCH2L-202ENST00000312858 2438 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 EIF3CL-201ENST00000380876 3085 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 CICP9-201ENST00000444451 1913 ntBASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 NIN-202ENST00000324330 4364 ntTSL 5 BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 RIN3-212ENST00000620541 3617 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 CCNE2-201ENST00000308108 2724 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 ZBTB49-201ENST00000337872 2889 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 NF1-204ENST00000431387 2889 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 ZWILCH-203ENST00000535141 2206 ntTSL 2 BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 RBM25-204ENST00000526754 1567 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 CHMP5-202ENST00000419016 1957 ntTSL 2 BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 AL365209.1-201ENST00000624418 6473 ntBASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 TRGV9-201ENST00000444775 1735 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 AL031687.1-201ENST00000450586 2137 ntTSL 2 BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 NUTM2E-202ENST00000602967 3623 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
RSPO3Q9BXY4 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
RSPO3Q9BXY4 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC12.84□□□□□ -0.35
RSPO3Q9BXY4 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
RSPO3Q9BXY4 CDK5RAP1-203ENST00000357886 2164 ntTSL 5 BASIC12.84□□□□□ -0.35
RSPO3Q9BXY4 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
RSPO3Q9BXY4 RBM15-204ENST00000617047 3284 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
RSPO3Q9BXY4 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
RSPO3Q9BXY4 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
RSPO3Q9BXY4 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
RSPO3Q9BXY4 CCDC3-202ENST00000378839 3180 ntAPPRIS ALT2 TSL 2 BASIC12.84□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms