Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC14.31□□□□□ -0.12
SHROOM3Q8TF72 NUP62CL-201ENST00000372466 1755 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SHROOM3Q8TF72 ANGPTL2-202ENST00000373425 3707 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SHROOM3Q8TF72 ZNF683-205ENST00000436292 1712 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
SHROOM3Q8TF72 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SHROOM3Q8TF72 CLOCK-211ENST00000513440 3580 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 AC004623.1-201ENST00000624592 2127 ntBASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 CATSPERD-202ENST00000381624 2516 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 ZSCAN2-202ENST00000327179 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 PPP1R13L-201ENST00000360957 3104 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 PNKD-203ENST00000273077 3021 ntAPPRIS P4 TSL 1 (best) BASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 SPATA20-227ENST00000634597 2587 ntAPPRIS ALT1 TSL 5 BASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 TSPEAR-AS1-202ENST00000451035 2108 ntTSL 5 BASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 ASNA1-201ENST00000357332 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 IDS-203ENST00000428056 1213 ntTSL 2 BASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 AC095040.1-201ENST00000513286 675 ntBASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 POU5F1P2-201ENST00000521750 823 ntBASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 GAP43-202ENST00000393780 1901 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 RCC2P5-201ENST00000492126 1487 ntBASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 UBBP4-202ENST00000584755 1459 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 CELF4-217ENST00000591282 1461 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 RBBP8NL-201ENST00000252998 2793 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 AC114689.3-201ENST00000583687 2991 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 KIAA0895-203ENST00000338533 4132 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SHROOM3Q8TF72 KRT17P4-205ENST00000579946 2555 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 IGHG4-202ENST00000641978 2597 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 CR382287.2-201ENST00000623370 1942 ntTSL 2 BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 RRN3P3-202ENST00000551766 3366 ntTSL 2 BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 SLC37A3-201ENST00000326232 3349 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 APOD-201ENST00000343267 1130 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 AC239868.1-201ENST00000369385 493 ntBASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 SERF2-206ENST00000409291 807 ntTSL 3 BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 MRPL22P1-201ENST00000505398 616 ntBASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 GMFG-209ENST00000600322 622 ntTSL 5 BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 TBX6-202ENST00000395224 1803 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 ATF3-202ENST00000341491 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 AL772337.1-201ENST00000399186 2014 ntTSL 5 BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 AL356753.1-201ENST00000427035 2018 ntTSL 2 BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 RPL13AP3-202ENST00000494676 1473 ntBASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 MRPL17-201ENST00000288937 1969 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 AC015712.2-202ENST00000560068 3213 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 AC093899.2-201ENST00000513963 1935 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 AL161772.1-201ENST00000610494 4412 ntBASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 TESPA1-201ENST00000316577 1898 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 TEX26-AS1-205ENST00000585870 2053 ntTSL 2 BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 GGA1-201ENST00000325180 2528 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SHROOM3Q8TF72 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms