Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 NFE2L1-218ENST00000583378 2051 ntTSL 5 BASIC13.62□□□□□ -0.23
PCDH1Q08174 PGAP2-202ENST00000300730 1843 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
PCDH1Q08174 PGAP2-203ENST00000396986 1837 ntTSL 2 BASIC13.62□□□□□ -0.23
PCDH1Q08174 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
PCDH1Q08174 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
PCDH1Q08174 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
PCDH1Q08174 ELAVL4-207ENST00000448907 1951 ntTSL 2 BASIC13.62□□□□□ -0.23
PCDH1Q08174 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
PCDH1Q08174 UBBP4-202ENST00000584755 1459 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
PCDH1Q08174 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
PCDH1Q08174 ARHGEF9-230ENST00000637178 2145 ntTSL 5 BASIC13.61□□□□□ -0.23
PCDH1Q08174 GMPPB-203ENST00000480687 6108 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
PCDH1Q08174 FMO6P-201ENST00000236166 1620 ntBASIC13.61□□□□□ -0.23
PCDH1Q08174 ENO2-201ENST00000229277 2423 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
PCDH1Q08174 HBP1-212ENST00000485846 2420 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
PCDH1Q08174 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
PCDH1Q08174 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC13.61□□□□□ -0.23
PCDH1Q08174 RIMBP2-201ENST00000261655 6321 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
PCDH1Q08174 GPNMB-203ENST00000409458 1673 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
PCDH1Q08174 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC13.61□□□□□ -0.23
PCDH1Q08174 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
PCDH1Q08174 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
PCDH1Q08174 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
PCDH1Q08174 NCR3-202ENST00000376071 541 ntTSL 5 BASIC13.61□□□□□ -0.23
PCDH1Q08174 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
PCDH1Q08174 HNRNPA1P32-201ENST00000396326 963 ntBASIC13.61□□□□□ -0.23
PCDH1Q08174 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
PCDH1Q08174 AL513211.1-201ENST00000429053 483 ntTSL 3 BASIC13.61□□□□□ -0.23
PCDH1Q08174 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
PCDH1Q08174 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC13.61□□□□□ -0.23
PCDH1Q08174 AC006033.1-201ENST00000440505 426 ntBASIC13.61□□□□□ -0.23
PCDH1Q08174 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
PCDH1Q08174 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC13.61□□□□□ -0.23
PCDH1Q08174 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC13.61□□□□□ -0.23
PCDH1Q08174 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
PCDH1Q08174 JPT2-214ENST00000569765 782 ntTSL 2 BASIC13.61□□□□□ -0.23
PCDH1Q08174 HPN-206ENST00000597419 1212 ntTSL 5 BASIC13.61□□□□□ -0.23
PCDH1Q08174 AC026740.1-201ENST00000607068 791 ntBASIC13.61□□□□□ -0.23
PCDH1Q08174 AL022328.3-201ENST00000607943 679 ntBASIC13.61□□□□□ -0.23
PCDH1Q08174 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
PCDH1Q08174 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC13.61□□□□□ -0.23
PCDH1Q08174 SGTB-201ENST00000381007 5469 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
PCDH1Q08174 AL356585.2-201ENST00000625078 2396 ntBASIC13.61□□□□□ -0.23
PCDH1Q08174 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
PCDH1Q08174 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
PCDH1Q08174 CCNB2-201ENST00000288207 1556 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
PCDH1Q08174 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
PCDH1Q08174 NHSL1-202ENST00000343505 6535 ntAPPRIS P3 TSL 5 BASIC13.61□□□□□ -0.23
PCDH1Q08174 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
PCDH1Q08174 R3HDM2-204ENST00000402412 4372 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
PCDH1Q08174 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
PCDH1Q08174 PP14571-202ENST00000404891 2017 ntTSL 2 BASIC13.61□□□□□ -0.23
PCDH1Q08174 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
PCDH1Q08174 LIMK1-208ENST00000538333 2170 ntTSL 2 BASIC13.61□□□□□ -0.23
PCDH1Q08174 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC13.61□□□□□ -0.23
PCDH1Q08174 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
PCDH1Q08174 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
PCDH1Q08174 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
PCDH1Q08174 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC13.61□□□□□ -0.23
PCDH1Q08174 GJB1-201ENST00000361726 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
PCDH1Q08174 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC13.61□□□□□ -0.23
PCDH1Q08174 RUNX3-203ENST00000399916 4340 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
PCDH1Q08174 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC13.6□□□□□ -0.23
PCDH1Q08174 C7orf57-204ENST00000435376 1925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
PCDH1Q08174 C7orf57-206ENST00000539619 1927 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
PCDH1Q08174 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC13.6□□□□□ -0.23
PCDH1Q08174 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
PCDH1Q08174 AC015802.6-201ENST00000640006 5654 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
PCDH1Q08174 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
PCDH1Q08174 HOXC4-202ENST00000430889 1666 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
PCDH1Q08174 NHLH2-202ENST00000369506 7226 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
PCDH1Q08174 MED6-201ENST00000256379 1995 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
PCDH1Q08174 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
PCDH1Q08174 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
PCDH1Q08174 COL20A1-203ENST00000422202 8097 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
PCDH1Q08174 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
PCDH1Q08174 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
PCDH1Q08174 APOL5-201ENST00000249044 1438 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
PCDH1Q08174 CLCN6-201ENST00000312413 5631 ntTSL 2 BASIC13.6□□□□□ -0.23
PCDH1Q08174 RNA5SP359-201ENST00000364838 113 ntBASIC13.6□□□□□ -0.23
PCDH1Q08174 AC239868.1-201ENST00000369385 493 ntBASIC13.6□□□□□ -0.23
PCDH1Q08174 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
PCDH1Q08174 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
PCDH1Q08174 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
PCDH1Q08174 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
PCDH1Q08174 OR8T1P-201ENST00000421347 918 ntBASIC13.6□□□□□ -0.23
PCDH1Q08174 AC016700.1-201ENST00000429424 312 ntBASIC13.6□□□□□ -0.23
PCDH1Q08174 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC13.6□□□□□ -0.23
PCDH1Q08174 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
PCDH1Q08174 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC13.6□□□□□ -0.23
PCDH1Q08174 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
PCDH1Q08174 AC108725.1-201ENST00000495472 409 ntBASIC13.6□□□□□ -0.23
PCDH1Q08174 TNFRSF10A-AS1-201ENST00000518308 637 ntTSL 3 BASIC13.6□□□□□ -0.23
PCDH1Q08174 TCP11L1-209ENST00000531632 1898 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
PCDH1Q08174 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC13.6□□□□□ -0.23
PCDH1Q08174 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC13.6□□□□□ -0.23
PCDH1Q08174 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC13.6□□□□□ -0.23
PCDH1Q08174 CMC2-204ENST00000562713 573 ntTSL 3 BASIC13.6□□□□□ -0.23
PCDH1Q08174 CMC2-209ENST00000565108 399 ntTSL 2 BASIC13.6□□□□□ -0.23
PCDH1Q08174 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms