Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
SUMO3P55854 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
SUMO3P55854 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC12.72□□□□□ -0.37
SUMO3P55854 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC12.72□□□□□ -0.37
SUMO3P55854 RPL8P2-201ENST00000430538 502 ntBASIC12.72□□□□□ -0.37
SUMO3P55854 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC12.72□□□□□ -0.37
SUMO3P55854 IGHJ2P-201ENST00000454480 60 ntBASIC12.72□□□□□ -0.37
SUMO3P55854 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC12.72□□□□□ -0.37
SUMO3P55854 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
SUMO3P55854 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC12.72□□□□□ -0.37
SUMO3P55854 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC12.72□□□□□ -0.37
SUMO3P55854 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC12.72□□□□□ -0.37
SUMO3P55854 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC12.72□□□□□ -0.37
SUMO3P55854 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC12.72□□□□□ -0.37
SUMO3P55854 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
SUMO3P55854 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
SUMO3P55854 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC12.72□□□□□ -0.37
SUMO3P55854 FCRL1-207ENST00000491942 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
SUMO3P55854 RET-205ENST00000615310 4337 ntTSL 5 BASIC12.72□□□□□ -0.37
SUMO3P55854 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
SUMO3P55854 PEG13-201ENST00000631594 5667 ntBASIC12.72□□□□□ -0.37
SUMO3P55854 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC12.72□□□□□ -0.37
SUMO3P55854 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
SUMO3P55854 TCP11L1-209ENST00000531632 1898 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
SUMO3P55854 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
SUMO3P55854 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
SUMO3P55854 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
SUMO3P55854 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
SUMO3P55854 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
SUMO3P55854 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
SUMO3P55854 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
SUMO3P55854 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
SUMO3P55854 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC12.71□□□□□ -0.37
SUMO3P55854 SRA1-201ENST00000336283 2107 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
SUMO3P55854 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
SUMO3P55854 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
SUMO3P55854 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC12.71□□□□□ -0.37
SUMO3P55854 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
SUMO3P55854 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
SUMO3P55854 SIGLEC6-201ENST00000343300 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
SUMO3P55854 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
SUMO3P55854 PPARG-205ENST00000397010 2017 ntAPPRIS ALT1 TSL 1 (best) BASIC12.71□□□□□ -0.37
SUMO3P55854 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
SUMO3P55854 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC12.71□□□□□ -0.37
SUMO3P55854 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
SUMO3P55854 AL359845.1-201ENST00000458202 1648 ntBASIC12.71□□□□□ -0.37
SUMO3P55854 LINC00511-213ENST00000581549 2265 ntTSL 2 BASIC12.71□□□□□ -0.37
SUMO3P55854 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
SUMO3P55854 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC12.71□□□□□ -0.37
SUMO3P55854 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
SUMO3P55854 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC12.71□□□□□ -0.37
SUMO3P55854 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
SUMO3P55854 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC12.71□□□□□ -0.37
SUMO3P55854 AL512306.1-201ENST00000432698 848 ntBASIC12.71□□□□□ -0.37
SUMO3P55854 CD81-209ENST00000492627 886 ntTSL 3 BASIC12.71□□□□□ -0.37
SUMO3P55854 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC12.71□□□□□ -0.37
SUMO3P55854 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC12.71□□□□□ -0.37
SUMO3P55854 TPM1-223ENST00000560445 485 ntTSL 3 BASIC12.71□□□□□ -0.37
SUMO3P55854 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC12.71□□□□□ -0.37
SUMO3P55854 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC12.71□□□□□ -0.37
SUMO3P55854 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
SUMO3P55854 CDK7-214ENST00000626796 358 ntTSL 5 BASIC12.71□□□□□ -0.37
SUMO3P55854 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC12.71□□□□□ -0.37
SUMO3P55854 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC12.71□□□□□ -0.37
SUMO3P55854 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
SUMO3P55854 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
SUMO3P55854 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
SUMO3P55854 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
SUMO3P55854 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
SUMO3P55854 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
SUMO3P55854 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC12.71□□□□□ -0.37
SUMO3P55854 PDCD6IPP2-206ENST00000566178 3351 ntTSL 5 BASIC12.71□□□□□ -0.38
SUMO3P55854 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
SUMO3P55854 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
SUMO3P55854 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC12.71□□□□□ -0.38
SUMO3P55854 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
SUMO3P55854 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
SUMO3P55854 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
SUMO3P55854 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.38
SUMO3P55854 AAR2-203ENST00000397286 1466 ntTSL 5 BASIC12.71□□□□□ -0.38
SUMO3P55854 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.38
SUMO3P55854 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
SUMO3P55854 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC12.71□□□□□ -0.38
SUMO3P55854 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
SUMO3P55854 TRAIP-201ENST00000331456 2028 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
SUMO3P55854 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC12.71□□□□□ -0.38
SUMO3P55854 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
SUMO3P55854 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
SUMO3P55854 AC138761.6-201ENST00000583997 1423 ntBASIC12.71□□□□□ -0.38
SUMO3P55854 MED6-201ENST00000256379 1995 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
SUMO3P55854 MIR9-3HG-201ENST00000536780 4778 ntTSL 3 BASIC12.7□□□□□ -0.38
SUMO3P55854 PPHLN1-206ENST00000395580 1693 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
SUMO3P55854 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
SUMO3P55854 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
SUMO3P55854 CAP2P1-201ENST00000557743 1390 ntBASIC12.7□□□□□ -0.38
SUMO3P55854 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC12.7□□□□□ -0.38
SUMO3P55854 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
SUMO3P55854 CACNA1A-211ENST00000592864 1623 ntTSL 3 BASIC12.7□□□□□ -0.38
SUMO3P55854 ADAMTS13-202ENST00000356589 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
SUMO3P55854 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC12.7□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms