Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 CXorf40A-212ENST00000514208 1840 ntAPPRIS ALT1 TSL 5 BASIC12.48□□□□□ -0.41
SOX2P48431 CETP-201ENST00000200676 1791 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SOX2P48431 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
SOX2P48431 SNCAIP-222ENST00000542191 2729 ntTSL 5 BASIC12.48□□□□□ -0.41
SOX2P48431 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SOX2P48431 PIK3R5-216ENST00000584803 2653 ntAPPRIS ALT1 TSL 5 BASIC12.48□□□□□ -0.41
SOX2P48431 PCDHGB3-201ENST00000576222 4727 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
SOX2P48431 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC12.48□□□□□ -0.41
SOX2P48431 LAP3P2-201ENST00000454686 1454 ntBASIC12.48□□□□□ -0.41
SOX2P48431 KRT8P4-201ENST00000509735 1454 ntBASIC12.48□□□□□ -0.41
SOX2P48431 GNAI2-203ENST00000422163 2407 ntTSL 2 BASIC12.48□□□□□ -0.41
SOX2P48431 TRPA1-201ENST00000262209 5223 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SOX2P48431 REV3L-207ENST00000435970 10943 ntTSL 2 BASIC12.48□□□□□ -0.41
SOX2P48431 C3orf18-206ENST00000449241 2365 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SOX2P48431 AMDHD2-202ENST00000302956 3273 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
SOX2P48431 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
SOX2P48431 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
SOX2P48431 DPY19L2P2-205ENST00000439473 3994 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
SOX2P48431 DCDC2-202ENST00000378454 4707 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SOX2P48431 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SOX2P48431 C19orf33-201ENST00000301246 467 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
SOX2P48431 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SOX2P48431 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
SOX2P48431 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
SOX2P48431 GOLGA6L11P-201ENST00000417252 1298 ntBASIC12.48□□□□□ -0.41
SOX2P48431 FAM197Y7-201ENST00000432892 766 ntBASIC12.48□□□□□ -0.41
SOX2P48431 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC12.48□□□□□ -0.41
SOX2P48431 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
SOX2P48431 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC12.48□□□□□ -0.41
SOX2P48431 AC190387.1-201ENST00000551683 408 ntBASIC12.48□□□□□ -0.41
SOX2P48431 JPT2-214ENST00000569765 782 ntTSL 2 BASIC12.48□□□□□ -0.41
SOX2P48431 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC12.48□□□□□ -0.41
SOX2P48431 AC011479.1-202ENST00000591889 528 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
SOX2P48431 AC008825.2-201ENST00000603374 718 ntBASIC12.48□□□□□ -0.41
SOX2P48431 AC073413.1-201ENST00000603927 732 ntBASIC12.48□□□□□ -0.41
SOX2P48431 CACNB1-202ENST00000394303 3742 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
SOX2P48431 CACNA1G-232ENST00000515411 6960 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
SOX2P48431 WHRN-201ENST00000265134 2847 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
SOX2P48431 TNFRSF21-201ENST00000296861 3595 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SOX2P48431 C12orf76-201ENST00000309050 1964 ntTSL 2 BASIC12.48□□□□□ -0.41
SOX2P48431 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC12.48□□□□□ -0.41
SOX2P48431 CADM1-204ENST00000536727 3520 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
SOX2P48431 PTH2R-201ENST00000272847 2713 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SOX2P48431 SECISBP2-202ENST00000375807 3462 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SOX2P48431 C1S-202ENST00000360817 2635 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SOX2P48431 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
SOX2P48431 LPCAT2-201ENST00000262134 5391 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SOX2P48431 DDR1-225ENST00000376568 3894 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
SOX2P48431 IFT81-201ENST00000242591 3108 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SOX2P48431 RAB40A-202ENST00000372633 3126 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
SOX2P48431 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SOX2P48431 PPP1R11-205ENST00000376772 1731 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SOX2P48431 TRAPPC9-201ENST00000389328 4474 ntTSL 2 BASIC12.48□□□□□ -0.41
SOX2P48431 AL353608.3-202ENST00000429953 4384 ntTSL 5 BASIC12.48□□□□□ -0.41
SOX2P48431 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC12.47□□□□□ -0.41
SOX2P48431 ACVR2A-201ENST00000241416 5728 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
SOX2P48431 FIBCD1-202ENST00000372338 3253 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
SOX2P48431 AL139385.1-201ENST00000611744 3272 ntBASIC12.47□□□□□ -0.41
SOX2P48431 TEX26-AS1-205ENST00000585870 2053 ntTSL 2 BASIC12.47□□□□□ -0.41
SOX2P48431 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
SOX2P48431 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
SOX2P48431 AC061965.1-201ENST00000560524 1465 ntBASIC12.47□□□□□ -0.41
SOX2P48431 GPR61-204ENST00000527748 4921 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
SOX2P48431 TRAIP-201ENST00000331456 2028 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
SOX2P48431 NTM-202ENST00000374786 3190 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
SOX2P48431 USP47-202ENST00000339865 7775 ntTSL 2 BASIC12.47□□□□□ -0.41
SOX2P48431 CDC20B-203ENST00000381375 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC12.47□□□□□ -0.41
SOX2P48431 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
SOX2P48431 EMBP1-203ENST00000622787 4235 ntTSL 2 BASIC12.47□□□□□ -0.41
SOX2P48431 AC010336.1-201ENST00000539278 4739 ntBASIC12.47□□□□□ -0.41
SOX2P48431 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC12.47□□□□□ -0.41
SOX2P48431 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC12.47□□□□□ -0.41
SOX2P48431 TRPM5-202ENST00000528453 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
SOX2P48431 LRCH3-203ENST00000425562 2970 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
SOX2P48431 SLC45A1-201ENST00000289877 2401 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
SOX2P48431 DSN1-204ENST00000426836 2441 ntAPPRIS P3 TSL 2 BASIC12.47□□□□□ -0.41
SOX2P48431 TCP11L1-209ENST00000531632 1898 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
SOX2P48431 MRVI1-201ENST00000423302 6126 ntAPPRIS ALT2 TSL 2 BASIC12.47□□□□□ -0.41
SOX2P48431 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
SOX2P48431 ZNF568-206ENST00000455427 2378 ntTSL 2 BASIC12.47□□□□□ -0.41
SOX2P48431 PRDM16-201ENST00000270722 8690 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
SOX2P48431 PTPN5-205ENST00000477854 2826 ntTSL 5 BASIC12.47□□□□□ -0.41
SOX2P48431 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
SOX2P48431 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC12.47□□□□□ -0.41
SOX2P48431 SNX21-203ENST00000372541 771 ntTSL 2 BASIC12.47□□□□□ -0.41
SOX2P48431 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
SOX2P48431 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC12.47□□□□□ -0.41
SOX2P48431 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC12.47□□□□□ -0.41
SOX2P48431 FAM207CP-201ENST00000443486 507 ntBASIC12.47□□□□□ -0.41
SOX2P48431 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC12.47□□□□□ -0.41
SOX2P48431 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC12.47□□□□□ -0.41
SOX2P48431 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
SOX2P48431 RN7SL713P-201ENST00000582127 302 ntBASIC12.47□□□□□ -0.41
SOX2P48431 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC12.47□□□□□ -0.41
SOX2P48431 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
SOX2P48431 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC12.47□□□□□ -0.41
SOX2P48431 CR392039.2-201ENST00000623182 509 ntBASIC12.47□□□□□ -0.41
SOX2P48431 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC12.47□□□□□ -0.41
SOX2P48431 CASC4-202ENST00000345795 3764 ntAPPRIS ALT1 TSL 1 (best) BASIC12.47□□□□□ -0.41
SOX2P48431 PLAT-201ENST00000220809 2706 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms