Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
BDNFP23560 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
BDNFP23560 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.03
BDNFP23560 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
BDNFP23560 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC14.83□□□□□ -0.03
BDNFP23560 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC14.83□□□□□ -0.04
BDNFP23560 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
BDNFP23560 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
BDNFP23560 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC14.83□□□□□ -0.04
BDNFP23560 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
BDNFP23560 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
BDNFP23560 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
BDNFP23560 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC14.83□□□□□ -0.04
BDNFP23560 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC14.83□□□□□ -0.04
BDNFP23560 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC14.83□□□□□ -0.04
BDNFP23560 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
BDNFP23560 RN7SL564P-201ENST00000496309 250 ntBASIC14.83□□□□□ -0.04
BDNFP23560 PARP8-218ENST00000513738 596 ntTSL 4 BASIC14.83□□□□□ -0.04
BDNFP23560 AP000911.2-201ENST00000534330 502 ntBASIC14.83□□□□□ -0.04
BDNFP23560 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC14.83□□□□□ -0.04
BDNFP23560 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC14.83□□□□□ -0.04
BDNFP23560 DNM1P30-201ENST00000563586 452 ntBASIC14.83□□□□□ -0.04
BDNFP23560 NUDT4P2-201ENST00000578341 546 ntBASIC14.83□□□□□ -0.04
BDNFP23560 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC14.83□□□□□ -0.04
BDNFP23560 AC005041.3-201ENST00000606287 649 ntBASIC14.83□□□□□ -0.04
BDNFP23560 AC007250.1-201ENST00000608934 338 ntBASIC14.83□□□□□ -0.04
BDNFP23560 HPX-213ENST00000615166 826 ntTSL 5 BASIC14.83□□□□□ -0.04
BDNFP23560 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC14.83□□□□□ -0.04
BDNFP23560 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
BDNFP23560 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
BDNFP23560 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
BDNFP23560 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC14.83□□□□□ -0.04
BDNFP23560 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC14.83□□□□□ -0.04
BDNFP23560 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
BDNFP23560 FUBP1-203ENST00000370768 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
BDNFP23560 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
BDNFP23560 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC14.83□□□□□ -0.04
BDNFP23560 YPEL4-201ENST00000300022 1721 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
BDNFP23560 GRK6P1-201ENST00000400595 1711 ntBASIC14.83□□□□□ -0.04
BDNFP23560 BANP-203ENST00000393207 2438 ntTSL 2 BASIC14.83□□□□□ -0.04
BDNFP23560 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
BDNFP23560 AL031728.1-201ENST00000449034 2479 ntTSL 3 BASIC14.83□□□□□ -0.04
BDNFP23560 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
BDNFP23560 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
BDNFP23560 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
BDNFP23560 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
BDNFP23560 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
BDNFP23560 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
BDNFP23560 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
BDNFP23560 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
BDNFP23560 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC14.82□□□□□ -0.04
BDNFP23560 PHB-210ENST00000511832 1509 ntTSL 2 BASIC14.82□□□□□ -0.04
BDNFP23560 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
BDNFP23560 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC14.82□□□□□ -0.04
BDNFP23560 SLC39A11-202ENST00000542342 2752 ntAPPRIS ALT1 TSL 2 BASIC14.82□□□□□ -0.04
BDNFP23560 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
BDNFP23560 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
BDNFP23560 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
BDNFP23560 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC14.82□□□□□ -0.04
BDNFP23560 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
BDNFP23560 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC14.82□□□□□ -0.04
BDNFP23560 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
BDNFP23560 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC14.82□□□□□ -0.04
BDNFP23560 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC14.82□□□□□ -0.04
BDNFP23560 AL356218.1-201ENST00000450864 353 ntTSL 3 BASIC14.82□□□□□ -0.04
BDNFP23560 TMCO5B-205ENST00000530020 894 ntBASIC14.82□□□□□ -0.04
BDNFP23560 CR383656.3-201ENST00000551315 183 ntBASIC14.82□□□□□ -0.04
BDNFP23560 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
BDNFP23560 AC007952.4-201ENST00000573866 637 ntBASIC14.82□□□□□ -0.04
BDNFP23560 RN7SL470P-201ENST00000583069 259 ntBASIC14.82□□□□□ -0.04
BDNFP23560 RN7SL736P-201ENST00000613111 269 ntBASIC14.82□□□□□ -0.04
BDNFP23560 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
BDNFP23560 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
BDNFP23560 AC073911.3-201ENST00000624401 631 ntBASIC14.82□□□□□ -0.04
BDNFP23560 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
BDNFP23560 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
BDNFP23560 PDXDC2P-206ENST00000534700 1315 ntBASIC14.82□□□□□ -0.04
BDNFP23560 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
BDNFP23560 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC14.82□□□□□ -0.04
BDNFP23560 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC14.82□□□□□ -0.04
BDNFP23560 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
BDNFP23560 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC14.82□□□□□ -0.04
BDNFP23560 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
BDNFP23560 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
BDNFP23560 TRIB2-202ENST00000381465 2778 ntTSL 2 BASIC14.82□□□□□ -0.04
BDNFP23560 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
BDNFP23560 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
BDNFP23560 AC019109.1-201ENST00000401725 1874 ntBASIC14.82□□□□□ -0.04
BDNFP23560 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC14.82□□□□□ -0.04
BDNFP23560 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
BDNFP23560 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
BDNFP23560 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
BDNFP23560 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
BDNFP23560 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
BDNFP23560 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC14.82□□□□□ -0.04
BDNFP23560 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
BDNFP23560 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC14.82□□□□□ -0.04
BDNFP23560 AC061965.1-201ENST00000560524 1465 ntBASIC14.82□□□□□ -0.04
BDNFP23560 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
BDNFP23560 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 62.2 ms