Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
COL6A2P12110 PARVG-202ENST00000415224 999 ntTSL 2 BASIC13.97□□□□□ -0.17
COL6A2P12110 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
COL6A2P12110 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A2P12110 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A2P12110 KRT17P7-201ENST00000451704 1104 ntBASIC13.97□□□□□ -0.17
COL6A2P12110 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
COL6A2P12110 TAF8-206ENST00000472818 719 ntTSL 2 BASIC13.97□□□□□ -0.17
COL6A2P12110 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
COL6A2P12110 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC13.97□□□□□ -0.17
COL6A2P12110 RNF41-210ENST00000552244 716 ntTSL 3 BASIC13.97□□□□□ -0.17
COL6A2P12110 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
COL6A2P12110 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC13.97□□□□□ -0.17
COL6A2P12110 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC13.97□□□□□ -0.17
COL6A2P12110 AC005324.6-201ENST00000587972 613 ntBASIC13.97□□□□□ -0.17
COL6A2P12110 DDX5-235ENST00000630471 473 ntTSL 4 BASIC13.97□□□□□ -0.17
COL6A2P12110 DSN1-204ENST00000426836 2441 ntAPPRIS P3 TSL 2 BASIC13.97□□□□□ -0.17
COL6A2P12110 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A2P12110 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A2P12110 JUN-201ENST00000371222 3540 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
COL6A2P12110 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A2P12110 LILRA1-201ENST00000251372 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A2P12110 RHPN1-AS1-201ENST00000518049 1918 ntBASIC13.97□□□□□ -0.17
COL6A2P12110 FBXL18-201ENST00000382368 3498 ntAPPRIS P2 TSL 5 BASIC13.97□□□□□ -0.17
COL6A2P12110 AC106818.1-201ENST00000623223 3242 ntBASIC13.97□□□□□ -0.17
COL6A2P12110 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
COL6A2P12110 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
COL6A2P12110 GLRX3-202ENST00000368644 3827 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
COL6A2P12110 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
COL6A2P12110 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A2P12110 KY-202ENST00000503669 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A2P12110 DPP10-201ENST00000310323 3052 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL6A2P12110 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
COL6A2P12110 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
COL6A2P12110 CARMIL2-202ENST00000545661 4119 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL6A2P12110 FAM167A-AS1-203ENST00000624614 1357 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
COL6A2P12110 TUBGCP4-201ENST00000260383 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL6A2P12110 NR4A2-209ENST00000426264 2642 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
COL6A2P12110 TRIM80P-201ENST00000455685 2848 ntBASIC13.96□□□□□ -0.17
COL6A2P12110 NUP62CL-201ENST00000372466 1755 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
COL6A2P12110 ZNF493-208ENST00000599461 1769 ntBASIC13.96□□□□□ -0.17
COL6A2P12110 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL6A2P12110 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL6A2P12110 PATL2-207ENST00000560775 1913 ntAPPRIS P3 TSL 5 BASIC13.96□□□□□ -0.17
COL6A2P12110 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
COL6A2P12110 GFPT2-201ENST00000253778 3093 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL6A2P12110 CDC45-205ENST00000437685 2072 ntTSL 2 BASIC13.96□□□□□ -0.17
COL6A2P12110 SARS-201ENST00000234677 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL6A2P12110 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC13.96□□□□□ -0.17
COL6A2P12110 STIM1-201ENST00000300737 4038 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL6A2P12110 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC13.96□□□□□ -0.17
COL6A2P12110 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC13.96□□□□□ -0.17
COL6A2P12110 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL6A2P12110 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC13.96□□□□□ -0.17
COL6A2P12110 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
COL6A2P12110 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC13.96□□□□□ -0.17
COL6A2P12110 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
COL6A2P12110 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC13.96□□□□□ -0.17
COL6A2P12110 EEF1DP1-201ENST00000585891 896 ntBASIC13.96□□□□□ -0.17
COL6A2P12110 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC13.96□□□□□ -0.17
COL6A2P12110 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC13.96□□□□□ -0.17
COL6A2P12110 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC13.96□□□□□ -0.17
COL6A2P12110 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL6A2P12110 KCNH6-204ENST00000581784 3017 ntTSL 2 BASIC13.96□□□□□ -0.17
COL6A2P12110 DYNC1I1-202ENST00000359388 2843 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL6A2P12110 MAP7-202ENST00000432797 4375 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
COL6A2P12110 SYBU-217ENST00000528331 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL6A2P12110 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL6A2P12110 ZNF721-205ENST00000511833 2966 ntAPPRIS P1 TSL 4 BASIC13.96□□□□□ -0.17
COL6A2P12110 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
COL6A2P12110 CDCA3-202ENST00000422785 2760 ntTSL 2 BASIC13.96□□□□□ -0.17
COL6A2P12110 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC13.96□□□□□ -0.18
COL6A2P12110 CCND3-215ENST00000511642 2394 ntTSL 2 BASIC13.96□□□□□ -0.18
COL6A2P12110 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC13.96□□□□□ -0.18
COL6A2P12110 FIBCD1-204ENST00000448616 3119 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.18
COL6A2P12110 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
COL6A2P12110 KCNMA1-291ENST00000640834 3664 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.18
COL6A2P12110 HTR3A-201ENST00000299961 1994 ntTSL 2 BASIC13.96□□□□□ -0.18
COL6A2P12110 MIR9-3HG-201ENST00000536780 4778 ntTSL 3 BASIC13.96□□□□□ -0.18
COL6A2P12110 JMJD6-203ENST00000445478 5303 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
COL6A2P12110 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.18
COL6A2P12110 AC000120.1-201ENST00000414227 1589 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
COL6A2P12110 LINC01257-201ENST00000376678 2473 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
COL6A2P12110 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.18
COL6A2P12110 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC13.95□□□□□ -0.18
COL6A2P12110 GTF2IRD1P1-202ENST00000457166 2426 ntTSL 2 BASIC13.95□□□□□ -0.18
COL6A2P12110 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A2P12110 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
COL6A2P12110 ELN-209ENST00000380576 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A2P12110 GFI1B-207ENST00000636137 1870 ntTSL 5 BASIC13.95□□□□□ -0.18
COL6A2P12110 HSPH1-202ENST00000380405 3480 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A2P12110 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A2P12110 MICAL1-202ENST00000358807 3645 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A2P12110 ZNF778-202ENST00000433976 3608 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
COL6A2P12110 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A2P12110 YY1AP1-208ENST00000361831 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A2P12110 EFEMP1-201ENST00000355426 1820 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A2P12110 DAB1-207ENST00000420954 1817 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A2P12110 AC002350.2-201ENST00000623894 1828 ntBASIC13.95□□□□□ -0.18
COL6A2P12110 KIAA1683-201ENST00000392413 4402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms