Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 UBA2-201ENST00000246548 4023 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
CXCL1P09341 DNMT3B-203ENST00000348286 4048 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
CXCL1P09341 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC10.95□□□□□ -0.66
CXCL1P09341 AL357054.4-201ENST00000606285 2814 ntBASIC10.95□□□□□ -0.66
CXCL1P09341 CDC20B-202ENST00000322374 1679 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
CXCL1P09341 PTGR2-205ENST00000555661 3851 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
CXCL1P09341 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
CXCL1P09341 SLC37A2-201ENST00000308074 2696 ntAPPRIS P3 TSL 1 (best) BASIC10.95□□□□□ -0.66
CXCL1P09341 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC10.95□□□□□ -0.66
CXCL1P09341 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC10.95□□□□□ -0.66
CXCL1P09341 BDKRB2-202ENST00000542454 6845 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
CXCL1P09341 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC10.95□□□□□ -0.66
CXCL1P09341 MDH2-203ENST00000432020 1548 ntTSL 2 BASIC10.95□□□□□ -0.66
CXCL1P09341 RNF43-208ENST00000584437 5575 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
CXCL1P09341 IKZF4-203ENST00000547167 2539 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
CXCL1P09341 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC10.95□□□□□ -0.66
CXCL1P09341 GTF2I-215ENST00000614986 4415 ntAPPRIS ALT1 TSL 1 (best) BASIC10.95□□□□□ -0.66
CXCL1P09341 GTF2I-221ENST00000621734 4412 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
CXCL1P09341 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
CXCL1P09341 AL135999.1-201ENST00000555968 3243 ntTSL 2 BASIC10.95□□□□□ -0.66
CXCL1P09341 ZNF25-201ENST00000302609 4139 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
CXCL1P09341 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC10.95□□□□□ -0.66
CXCL1P09341 ABLIM3-203ENST00000356541 2290 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
CXCL1P09341 ABLIM3-211ENST00000517451 2287 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
CXCL1P09341 BDNF-202ENST00000356660 4018 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
CXCL1P09341 FAM13B-203ENST00000425075 3098 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
CXCL1P09341 WASF3-202ENST00000361042 4823 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
CXCL1P09341 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC10.95□□□□□ -0.66
CXCL1P09341 AL139400.1-201ENST00000366220 510 ntBASIC10.95□□□□□ -0.66
CXCL1P09341 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC10.95□□□□□ -0.66
CXCL1P09341 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
CXCL1P09341 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
CXCL1P09341 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
CXCL1P09341 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC10.95□□□□□ -0.66
CXCL1P09341 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
CXCL1P09341 AL139094.1-201ENST00000405549 1188 ntBASIC10.95□□□□□ -0.66
CXCL1P09341 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC10.95□□□□□ -0.66
CXCL1P09341 AC114501.2-201ENST00000439631 535 ntBASIC10.95□□□□□ -0.66
CXCL1P09341 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC10.95□□□□□ -0.66
CXCL1P09341 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
CXCL1P09341 RPL13AP25-201ENST00000484130 612 ntBASIC10.95□□□□□ -0.66
CXCL1P09341 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
CXCL1P09341 MEIS3P1-201ENST00000495167 958 ntBASIC10.95□□□□□ -0.66
CXCL1P09341 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC10.95□□□□□ -0.66
CXCL1P09341 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC10.95□□□□□ -0.66
CXCL1P09341 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC10.95□□□□□ -0.66
CXCL1P09341 AC022616.1-201ENST00000518688 554 ntBASIC10.95□□□□□ -0.66
CXCL1P09341 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC10.95□□□□□ -0.66
CXCL1P09341 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC10.95□□□□□ -0.66
CXCL1P09341 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC10.95□□□□□ -0.66
CXCL1P09341 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
CXCL1P09341 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC10.95□□□□□ -0.66
CXCL1P09341 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC10.95□□□□□ -0.66
CXCL1P09341 MIR4469-201ENST00000583919 79 ntBASIC10.95□□□□□ -0.66
CXCL1P09341 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC10.95□□□□□ -0.66
CXCL1P09341 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC10.95□□□□□ -0.66
CXCL1P09341 AL596442.2-201ENST00000610240 980 ntBASIC10.95□□□□□ -0.66
CXCL1P09341 AL138828.2-201ENST00000615812 383 ntBASIC10.95□□□□□ -0.66
CXCL1P09341 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC10.95□□□□□ -0.66
CXCL1P09341 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC10.95□□□□□ -0.66
CXCL1P09341 PCDHA10-202ENST00000506939 3788 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
CXCL1P09341 CTR9-201ENST00000361367 4586 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
CXCL1P09341 AC138150.2-201ENST00000589796 2053 ntTSL 2 BASIC10.95□□□□□ -0.66
CXCL1P09341 EXOC7-207ENST00000411744 2031 ntAPPRIS ALT1 TSL 1 (best) BASIC10.95□□□□□ -0.66
CXCL1P09341 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
CXCL1P09341 AL353608.3-202ENST00000429953 4384 ntTSL 5 BASIC10.95□□□□□ -0.66
CXCL1P09341 ANXA8-205ENST00000585281 1960 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
CXCL1P09341 TRIM21-201ENST00000254436 1924 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
CXCL1P09341 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
CXCL1P09341 TRPM2-201ENST00000300481 5627 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
CXCL1P09341 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
CXCL1P09341 OPRL1-202ENST00000349451 3369 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
CXCL1P09341 PRKG2-201ENST00000264399 4822 ntAPPRIS P1 TSL 5 BASIC10.95□□□□□ -0.66
CXCL1P09341 EHD1-213ENST00000621096 3336 ntTSL 5 BASIC10.95□□□□□ -0.66
CXCL1P09341 GPC3-201ENST00000370818 2568 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
CXCL1P09341 OLFML2B-201ENST00000294794 3160 ntAPPRIS P3 TSL 1 (best) BASIC10.95□□□□□ -0.66
CXCL1P09341 BAG2-201ENST00000370693 6651 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
CXCL1P09341 LINC01209-201ENST00000451289 2400 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
CXCL1P09341 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
CXCL1P09341 PALLD-209ENST00000507735 4379 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
CXCL1P09341 TUBGCP2-210ENST00000543663 4302 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
CXCL1P09341 ESPNL-203ENST00000409506 3610 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
CXCL1P09341 MIR34AHG-203ENST00000635687 4211 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
CXCL1P09341 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
CXCL1P09341 LCA5-202ENST00000392959 4719 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
CXCL1P09341 SLC38A1-202ENST00000439706 3436 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
CXCL1P09341 HSPA12A-205ENST00000635765 5841 ntAPPRIS ALT2 TSL 5 BASIC10.94□□□□□ -0.66
CXCL1P09341 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
CXCL1P09341 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
CXCL1P09341 KCNMA1-241ENST00000638606 3852 ntAPPRIS ALT2 TSL 5 BASIC10.94□□□□□ -0.66
CXCL1P09341 KCNMA1-279ENST00000640182 3852 ntAPPRIS ALT2 TSL 5 BASIC10.94□□□□□ -0.66
CXCL1P09341 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC10.94□□□□□ -0.66
CXCL1P09341 SYDE1-203ENST00000600252 3832 ntTSL 2 BASIC10.94□□□□□ -0.66
CXCL1P09341 LRRC8A-203ENST00000372600 4355 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
CXCL1P09341 KRT15-202ENST00000393974 3758 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
CXCL1P09341 GMPR2-206ENST00000557854 2025 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
CXCL1P09341 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
CXCL1P09341 REST-208ENST00000619101 7114 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
CXCL1P09341 SLFNL1-AS1-201ENST00000626479 4800 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
CXCL1P09341 LRTM2-201ENST00000299194 3688 ntAPPRIS P1 TSL 2 BASIC10.94□□□□□ -0.66
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms