Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
USP39Q53GS9 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
USP39Q53GS9 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
USP39Q53GS9 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
USP39Q53GS9 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
USP39Q53GS9 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC14.36□□□□□ -0.11
USP39Q53GS9 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
USP39Q53GS9 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
USP39Q53GS9 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
USP39Q53GS9 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
USP39Q53GS9 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
USP39Q53GS9 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
USP39Q53GS9 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
USP39Q53GS9 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
USP39Q53GS9 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
USP39Q53GS9 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
USP39Q53GS9 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
USP39Q53GS9 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC14.36□□□□□ -0.11
USP39Q53GS9 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
USP39Q53GS9 NHP2-202ENST00000314397 599 ntTSL 2 BASIC14.36□□□□□ -0.11
USP39Q53GS9 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
USP39Q53GS9 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
USP39Q53GS9 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
USP39Q53GS9 AC016757.1-202ENST00000409376 892 ntTSL 3 BASIC14.36□□□□□ -0.11
USP39Q53GS9 STK16-203ENST00000409516 895 ntTSL 2 BASIC14.36□□□□□ -0.11
USP39Q53GS9 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC14.36□□□□□ -0.11
USP39Q53GS9 OR8T1P-201ENST00000421347 918 ntBASIC14.36□□□□□ -0.11
USP39Q53GS9 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC14.36□□□□□ -0.11
USP39Q53GS9 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC14.36□□□□□ -0.11
USP39Q53GS9 AGPAT5P1-201ENST00000455855 1019 ntBASIC14.36□□□□□ -0.11
USP39Q53GS9 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC14.36□□□□□ -0.11
USP39Q53GS9 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
USP39Q53GS9 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC14.36□□□□□ -0.11
USP39Q53GS9 RN7SL23P-201ENST00000484055 275 ntBASIC14.36□□□□□ -0.11
USP39Q53GS9 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
USP39Q53GS9 AC068867.1-201ENST00000559855 150 ntBASIC14.36□□□□□ -0.11
USP39Q53GS9 ELP5-212ENST00000574255 671 ntTSL 2 BASIC14.36□□□□□ -0.11
USP39Q53GS9 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC14.36□□□□□ -0.11
USP39Q53GS9 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC14.36□□□□□ -0.11
USP39Q53GS9 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
USP39Q53GS9 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
USP39Q53GS9 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC14.36□□□□□ -0.11
USP39Q53GS9 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
USP39Q53GS9 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
USP39Q53GS9 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
USP39Q53GS9 CTBP2P8-201ENST00000422584 1330 ntBASIC14.36□□□□□ -0.11
USP39Q53GS9 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
USP39Q53GS9 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
USP39Q53GS9 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
USP39Q53GS9 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
USP39Q53GS9 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
USP39Q53GS9 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
USP39Q53GS9 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
USP39Q53GS9 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
USP39Q53GS9 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC14.35□□□□□ -0.11
USP39Q53GS9 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
USP39Q53GS9 MYBPHL-201ENST00000357155 1372 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
USP39Q53GS9 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
USP39Q53GS9 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC14.35□□□□□ -0.11
USP39Q53GS9 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC14.35□□□□□ -0.11
USP39Q53GS9 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
USP39Q53GS9 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
USP39Q53GS9 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
USP39Q53GS9 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
USP39Q53GS9 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
USP39Q53GS9 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
USP39Q53GS9 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC14.35□□□□□ -0.11
USP39Q53GS9 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
USP39Q53GS9 PYY2-201ENST00000315776 282 ntBASIC14.35□□□□□ -0.11
USP39Q53GS9 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC14.35□□□□□ -0.11
USP39Q53GS9 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
USP39Q53GS9 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
USP39Q53GS9 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC14.35□□□□□ -0.11
USP39Q53GS9 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
USP39Q53GS9 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
USP39Q53GS9 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC14.35□□□□□ -0.11
USP39Q53GS9 AC226150.1-201ENST00000544259 466 ntBASIC14.35□□□□□ -0.11
USP39Q53GS9 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC14.35□□□□□ -0.11
USP39Q53GS9 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC14.35□□□□□ -0.11
USP39Q53GS9 ETV2-207ENST00000619399 994 ntTSL 5 BASIC14.35□□□□□ -0.11
USP39Q53GS9 AC002044.2-201ENST00000624910 970 ntBASIC14.35□□□□□ -0.11
USP39Q53GS9 BRD7P5-201ENST00000299197 1822 ntBASIC14.35□□□□□ -0.11
USP39Q53GS9 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
USP39Q53GS9 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC14.35□□□□□ -0.11
USP39Q53GS9 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
USP39Q53GS9 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
USP39Q53GS9 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC14.35□□□□□ -0.11
USP39Q53GS9 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
USP39Q53GS9 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC14.35□□□□□ -0.11
USP39Q53GS9 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
USP39Q53GS9 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
USP39Q53GS9 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC14.35□□□□□ -0.11
USP39Q53GS9 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
USP39Q53GS9 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
USP39Q53GS9 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
USP39Q53GS9 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
USP39Q53GS9 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
USP39Q53GS9 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
USP39Q53GS9 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
USP39Q53GS9 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC14.34□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms