Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 GPNMB-203ENST00000409458 1673 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC88AQ3V6T2 VASH1-AS1-202ENST00000556072 1684 ntTSL 2 BASIC16.79■□□□□ 0.28
CCDC88AQ3V6T2 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC88AQ3V6T2 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC88AQ3V6T2 CASK-202ENST00000378158 3848 ntTSL 5 BASIC16.78■□□□□ 0.28
CCDC88AQ3V6T2 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
CCDC88AQ3V6T2 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC88AQ3V6T2 INTS4P1-203ENST00000641008 3683 ntBASIC16.78■□□□□ 0.28
CCDC88AQ3V6T2 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
CCDC88AQ3V6T2 ECHDC2-201ENST00000358358 1126 ntTSL 2 BASIC16.78■□□□□ 0.28
CCDC88AQ3V6T2 FAM9C-202ENST00000380625 1122 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC88AQ3V6T2 MRPL55-219ENST00000391867 685 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
CCDC88AQ3V6T2 TUBB2BP1-201ENST00000404155 871 ntBASIC16.78■□□□□ 0.28
CCDC88AQ3V6T2 CORO1C-203ENST00000421578 1296 ntTSL 2 BASIC16.78■□□□□ 0.28
CCDC88AQ3V6T2 RNF181-203ENST00000441634 844 ntAPPRIS ALT1 TSL 2 BASIC16.78■□□□□ 0.28
CCDC88AQ3V6T2 UGT1A12P-201ENST00000447084 853 ntBASIC16.78■□□□□ 0.28
CCDC88AQ3V6T2 AC098820.2-201ENST00000457694 666 ntTSL 5 BASIC16.78■□□□□ 0.28
CCDC88AQ3V6T2 AC120498.5-201ENST00000561757 299 ntBASIC16.78■□□□□ 0.28
CCDC88AQ3V6T2 AC083798.2-202ENST00000609469 553 ntTSL 4 BASIC16.78■□□□□ 0.28
CCDC88AQ3V6T2 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC16.78■□□□□ 0.28
CCDC88AQ3V6T2 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
CCDC88AQ3V6T2 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
CCDC88AQ3V6T2 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC16.78■□□□□ 0.28
CCDC88AQ3V6T2 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC16.78■□□□□ 0.28
CCDC88AQ3V6T2 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC88AQ3V6T2 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
CCDC88AQ3V6T2 Z98885.2-201ENST00000565177 1567 ntTSL 2 BASIC16.78■□□□□ 0.28
CCDC88AQ3V6T2 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
CCDC88AQ3V6T2 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
CCDC88AQ3V6T2 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC88AQ3V6T2 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC88AQ3V6T2 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC16.78■□□□□ 0.28
CCDC88AQ3V6T2 STK16-202ENST00000409260 1493 ntTSL 5 BASIC16.78■□□□□ 0.28
CCDC88AQ3V6T2 SALL2-205ENST00000611430 1466 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC88AQ3V6T2 BCL2L11-203ENST00000357757 947 ntTSL 5 BASIC16.78■□□□□ 0.28
CCDC88AQ3V6T2 SPATA21-202ENST00000375577 1136 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC88AQ3V6T2 LINC01875-201ENST00000454477 660 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC88AQ3V6T2 GOLT1B-206ENST00000542038 933 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC88AQ3V6T2 AP000439.2-201ENST00000542064 726 ntTSL 2 BASIC16.78■□□□□ 0.28
CCDC88AQ3V6T2 AL445363.2-201ENST00000554608 837 ntTSL 2 BASIC16.78■□□□□ 0.28
CCDC88AQ3V6T2 LINC01543-201ENST00000578367 900 ntTSL 5 BASIC16.78■□□□□ 0.28
CCDC88AQ3V6T2 BOLA3P2-201ENST00000586496 323 ntBASIC16.78■□□□□ 0.28
CCDC88AQ3V6T2 TARM1-202ENST00000616041 1218 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
CCDC88AQ3V6T2 AL445363.1-201ENST00000623749 952 ntTSL 2 BASIC16.78■□□□□ 0.28
CCDC88AQ3V6T2 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
CCDC88AQ3V6T2 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC88AQ3V6T2 GOSR2-209ENST00000575949 1444 ntTSL 2 BASIC16.77■□□□□ 0.28
CCDC88AQ3V6T2 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC88AQ3V6T2 SPAG1-205ENST00000520508 1796 ntTSL 5 BASIC16.77■□□□□ 0.28
CCDC88AQ3V6T2 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC88AQ3V6T2 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
CCDC88AQ3V6T2 RERG-201ENST00000256953 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC88AQ3V6T2 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC16.77■□□□□ 0.28
CCDC88AQ3V6T2 AC007191.1-201ENST00000623179 2995 ntBASIC16.77■□□□□ 0.28
CCDC88AQ3V6T2 FTSJ1-203ENST00000396894 1669 ntTSL 2 BASIC16.77■□□□□ 0.28
CCDC88AQ3V6T2 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC88AQ3V6T2 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC88AQ3V6T2 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC16.77■□□□□ 0.28
CCDC88AQ3V6T2 CCL24-201ENST00000222902 582 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CCDC88AQ3V6T2 PDCD6-201ENST00000264933 1135 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
CCDC88AQ3V6T2 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CCDC88AQ3V6T2 CASP2-203ENST00000392925 616 ntTSL 3 BASIC16.77■□□□□ 0.27
CCDC88AQ3V6T2 ASS1P1-201ENST00000402854 1237 ntBASIC16.77■□□□□ 0.27
CCDC88AQ3V6T2 SUMO1-206ENST00000409368 1187 ntTSL 4 BASIC16.77■□□□□ 0.27
CCDC88AQ3V6T2 KCNMA1-AS1-201ENST00000426234 863 ntTSL 5 BASIC16.77■□□□□ 0.27
CCDC88AQ3V6T2 AC019205.2-201ENST00000442007 1083 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
CCDC88AQ3V6T2 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
CCDC88AQ3V6T2 AP002495.1-205ENST00000529513 655 ntAPPRIS ALT2 TSL 3 BASIC16.77■□□□□ 0.27
CCDC88AQ3V6T2 AC010202.1-201ENST00000551181 405 ntBASIC16.77■□□□□ 0.27
CCDC88AQ3V6T2 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CCDC88AQ3V6T2 INCA1-204ENST00000576820 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
CCDC88AQ3V6T2 AC100786.1-201ENST00000583018 513 ntTSL 3 BASIC16.77■□□□□ 0.27
CCDC88AQ3V6T2 MRPS31P4-202ENST00000613769 583 ntTSL 4 BASIC16.77■□□□□ 0.27
CCDC88AQ3V6T2 MIR8071-1-201ENST00000616769 65 ntBASIC16.77■□□□□ 0.27
CCDC88AQ3V6T2 MIR8071-2-201ENST00000616772 65 ntBASIC16.77■□□□□ 0.27
CCDC88AQ3V6T2 Metazoa_SRP.153-201ENST00000620153 341 ntBASIC16.77■□□□□ 0.27
CCDC88AQ3V6T2 RAPGEFL1-202ENST00000456989 1582 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
CCDC88AQ3V6T2 PLEKHG6-201ENST00000011684 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CCDC88AQ3V6T2 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CCDC88AQ3V6T2 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC16.77■□□□□ 0.27
CCDC88AQ3V6T2 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CCDC88AQ3V6T2 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC16.77■□□□□ 0.27
CCDC88AQ3V6T2 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
CCDC88AQ3V6T2 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC16.77■□□□□ 0.27
CCDC88AQ3V6T2 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
CCDC88AQ3V6T2 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC88AQ3V6T2 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
CCDC88AQ3V6T2 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
CCDC88AQ3V6T2 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC88AQ3V6T2 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
CCDC88AQ3V6T2 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC88AQ3V6T2 ZWINT-202ENST00000361148 807 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
CCDC88AQ3V6T2 MRPL55-209ENST00000366735 1212 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC88AQ3V6T2 CMTM5-204ENST00000382809 378 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC88AQ3V6T2 MRPL48-203ENST00000398483 1058 ntTSL 3 BASIC16.76■□□□□ 0.27
CCDC88AQ3V6T2 DDC-204ENST00000426377 1700 ntTSL 3 BASIC16.76■□□□□ 0.27
CCDC88AQ3V6T2 RN7SL838P-201ENST00000481676 295 ntBASIC16.76■□□□□ 0.27
CCDC88AQ3V6T2 AP000920.1-201ENST00000531824 344 ntBASIC16.76■□□□□ 0.27
CCDC88AQ3V6T2 IMMP1L-215ENST00000534812 612 ntTSL 2 BASIC16.76■□□□□ 0.27
CCDC88AQ3V6T2 MAGEC3-205ENST00000544766 1707 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 57.8 ms