Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
RNF4P78317 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
RNF4P78317 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC13.09□□□□□ -0.31
RNF4P78317 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
RNF4P78317 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
RNF4P78317 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC13.09□□□□□ -0.31
RNF4P78317 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC13.09□□□□□ -0.31
RNF4P78317 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
RNF4P78317 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
RNF4P78317 TEKT4P2-202ENST00000559466 1312 ntBASIC13.09□□□□□ -0.31
RNF4P78317 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
RNF4P78317 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
RNF4P78317 TAB2-208ENST00000636456 3092 ntTSL 5 BASIC13.09□□□□□ -0.31
RNF4P78317 AC068760.1-201ENST00000493579 1953 ntBASIC13.09□□□□□ -0.31
RNF4P78317 GOLGA8EP-201ENST00000530246 1959 ntBASIC13.09□□□□□ -0.31
RNF4P78317 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
RNF4P78317 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
RNF4P78317 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.31
RNF4P78317 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.31
RNF4P78317 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC13.08□□□□□ -0.31
RNF4P78317 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC13.08□□□□□ -0.31
RNF4P78317 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.31
RNF4P78317 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
RNF4P78317 SENP3-202ENST00000429205 2222 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
RNF4P78317 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
RNF4P78317 KRT8P24-201ENST00000560290 1559 ntBASIC13.08□□□□□ -0.32
RNF4P78317 OS9-204ENST00000389146 2091 ntTSL 2 BASIC13.08□□□□□ -0.32
RNF4P78317 TOM1L2-214ENST00000581396 5595 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
RNF4P78317 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
RNF4P78317 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC13.08□□□□□ -0.32
RNF4P78317 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
RNF4P78317 UFM1-202ENST00000379649 846 ntTSL 4 BASIC13.08□□□□□ -0.32
RNF4P78317 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
RNF4P78317 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
RNF4P78317 DNAJB1P1-201ENST00000429417 1024 ntBASIC13.08□□□□□ -0.32
RNF4P78317 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC13.08□□□□□ -0.32
RNF4P78317 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
RNF4P78317 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
RNF4P78317 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC13.08□□□□□ -0.32
RNF4P78317 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC13.08□□□□□ -0.32
RNF4P78317 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC13.08□□□□□ -0.32
RNF4P78317 TPM1-223ENST00000560445 485 ntTSL 3 BASIC13.08□□□□□ -0.32
RNF4P78317 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC13.08□□□□□ -0.32
RNF4P78317 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC13.08□□□□□ -0.32
RNF4P78317 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC13.08□□□□□ -0.32
RNF4P78317 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC13.08□□□□□ -0.32
RNF4P78317 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC13.08□□□□□ -0.32
RNF4P78317 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC13.08□□□□□ -0.32
RNF4P78317 RN7SL665P-201ENST00000578793 300 ntBASIC13.08□□□□□ -0.32
RNF4P78317 MIR4522-201ENST00000584932 87 ntBASIC13.08□□□□□ -0.32
RNF4P78317 AC016629.1-201ENST00000596579 586 ntBASIC13.08□□□□□ -0.32
RNF4P78317 AC084346.2-201ENST00000607097 949 ntBASIC13.08□□□□□ -0.32
RNF4P78317 AC103691.2-201ENST00000618824 433 ntBASIC13.08□□□□□ -0.32
RNF4P78317 C1QTNF1-204ENST00000392445 2833 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
RNF4P78317 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC13.08□□□□□ -0.32
RNF4P78317 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC13.08□□□□□ -0.32
RNF4P78317 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
RNF4P78317 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
RNF4P78317 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
RNF4P78317 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
RNF4P78317 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC13.08□□□□□ -0.32
RNF4P78317 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
RNF4P78317 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
RNF4P78317 SELENOV-202ENST00000423711 1701 ntTSL 5 BASIC13.08□□□□□ -0.32
RNF4P78317 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
RNF4P78317 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC13.07□□□□□ -0.32
RNF4P78317 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC13.07□□□□□ -0.32
RNF4P78317 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RNF4P78317 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC13.07□□□□□ -0.32
RNF4P78317 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RNF4P78317 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RNF4P78317 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC13.07□□□□□ -0.32
RNF4P78317 ANKH-201ENST00000284268 8203 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RNF4P78317 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
RNF4P78317 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
RNF4P78317 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RNF4P78317 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC13.07□□□□□ -0.32
RNF4P78317 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
RNF4P78317 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
RNF4P78317 CARHSP1-217ENST00000611932 2833 ntAPPRIS P1 TSL 3 BASIC13.07□□□□□ -0.32
RNF4P78317 ADAMTS7P1-201ENST00000613213 4793 ntBASIC13.07□□□□□ -0.32
RNF4P78317 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RNF4P78317 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RNF4P78317 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RNF4P78317 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RNF4P78317 SAT1-201ENST00000379251 801 ntTSL 2 BASIC13.07□□□□□ -0.32
RNF4P78317 SAT1-202ENST00000379253 909 ntTSL 2 BASIC13.07□□□□□ -0.32
RNF4P78317 SAT1-203ENST00000379254 868 ntTSL 3 BASIC13.07□□□□□ -0.32
RNF4P78317 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RNF4P78317 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
RNF4P78317 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
RNF4P78317 AC026316.1-201ENST00000398900 414 ntBASIC13.07□□□□□ -0.32
RNF4P78317 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
RNF4P78317 PPP1R2P4-201ENST00000424051 595 ntBASIC13.07□□□□□ -0.32
RNF4P78317 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC13.07□□□□□ -0.32
RNF4P78317 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC13.07□□□□□ -0.32
RNF4P78317 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC13.07□□□□□ -0.32
RNF4P78317 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
RNF4P78317 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
RNF4P78317 NDUFS6P1-201ENST00000485187 316 ntBASIC13.07□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms