Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC11.66□□□□□ -0.54
CDX1P47902 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CDX1P47902 EOGT-202ENST00000383701 4731 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CDX1P47902 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC11.66□□□□□ -0.54
CDX1P47902 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC11.66□□□□□ -0.54
CDX1P47902 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC11.66□□□□□ -0.54
CDX1P47902 LINC01019-201ENST00000505443 3199 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CDX1P47902 LILRA1-201ENST00000251372 1910 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CDX1P47902 MAMDC4-201ENST00000317446 3658 ntAPPRIS P2 TSL 1 (best) BASIC11.66□□□□□ -0.54
CDX1P47902 ZNF200-205ENST00000431561 3348 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
CDX1P47902 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC11.66□□□□□ -0.54
CDX1P47902 GOLGA6L10-209ENST00000621197 4160 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
CDX1P47902 UBE2I-204ENST00000397515 3109 ntAPPRIS P1 TSL 3 BASIC11.66□□□□□ -0.54
CDX1P47902 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CDX1P47902 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC11.66□□□□□ -0.54
CDX1P47902 TMEM100-201ENST00000424486 1747 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CDX1P47902 NISCH-207ENST00000479054 5173 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
CDX1P47902 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC11.66□□□□□ -0.54
CDX1P47902 TRPC7-201ENST00000352189 2241 ntTSL 5 BASIC11.66□□□□□ -0.54
CDX1P47902 FUT3-207ENST00000589620 2239 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CDX1P47902 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CDX1P47902 GAS6-AS1-201ENST00000458001 7169 ntTSL 5 BASIC11.66□□□□□ -0.54
CDX1P47902 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CDX1P47902 FLNC-202ENST00000346177 9042 ntAPPRIS ALT1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CDX1P47902 BCL2-201ENST00000333681 3209 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CDX1P47902 ABI1-213ENST00000536334 3380 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
CDX1P47902 AC145098.2-201ENST00000623593 3026 ntBASIC11.65□□□□□ -0.54
CDX1P47902 DGKZ-216ENST00000528615 2692 ntTSL 5 BASIC11.65□□□□□ -0.54
CDX1P47902 POTEE-201ENST00000356920 4159 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CDX1P47902 ADAM19-203ENST00000517905 3312 ntTSL 5 BASIC11.65□□□□□ -0.54
CDX1P47902 FKBP4P6-201ENST00000457486 1332 ntBASIC11.65□□□□□ -0.54
CDX1P47902 DRD2-210ENST00000544518 2473 ntAPPRIS ALT1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CDX1P47902 MRPL17-201ENST00000288937 1969 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CDX1P47902 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
CDX1P47902 LINC00865-202ENST00000448963 4272 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
CDX1P47902 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC11.65□□□□□ -0.54
CDX1P47902 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC11.65□□□□□ -0.54
CDX1P47902 HTR5A-201ENST00000287907 2912 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CDX1P47902 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CDX1P47902 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC11.65□□□□□ -0.54
CDX1P47902 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CDX1P47902 FAM76A-204ENST00000373954 3567 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.54
CDX1P47902 PLPP6-201ENST00000381883 2944 ntAPPRIS P1 BASIC11.65□□□□□ -0.54
CDX1P47902 GTF2IRD2B-203ENST00000472837 3560 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CDX1P47902 SMPDL3B-206ENST00000549094 1611 ntTSL 5 BASIC11.65□□□□□ -0.54
CDX1P47902 KHSRPP1-201ENST00000427983 1768 ntBASIC11.65□□□□□ -0.54
CDX1P47902 PI4KAP2-211ENST00000486209 3213 ntTSL 5 BASIC11.65□□□□□ -0.54
CDX1P47902 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
CDX1P47902 YY1AP1-208ENST00000361831 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
CDX1P47902 AMER1-202ENST00000374869 3688 ntTSL 5 BASIC11.65□□□□□ -0.54
CDX1P47902 KCNIP2-203ENST00000348850 2089 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
CDX1P47902 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CDX1P47902 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.54
CDX1P47902 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
CDX1P47902 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CDX1P47902 AC079178.1-201ENST00000420915 656 ntBASIC11.65□□□□□ -0.54
CDX1P47902 OLR1-203ENST00000432556 950 ntTSL 2 BASIC11.65□□□□□ -0.54
CDX1P47902 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC11.65□□□□□ -0.54
CDX1P47902 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC11.65□□□□□ -0.54
CDX1P47902 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
CDX1P47902 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
CDX1P47902 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
CDX1P47902 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
CDX1P47902 RIT1-205ENST00000539040 919 ntTSL 2 BASIC11.65□□□□□ -0.54
CDX1P47902 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC11.65□□□□□ -0.54
CDX1P47902 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC11.65□□□□□ -0.54
CDX1P47902 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC11.65□□□□□ -0.54
CDX1P47902 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.54
CDX1P47902 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC11.65□□□□□ -0.54
CDX1P47902 MIR4741-201ENST00000579822 90 ntBASIC11.65□□□□□ -0.54
CDX1P47902 AC091271.1-201ENST00000611877 1162 ntBASIC11.65□□□□□ -0.54
CDX1P47902 AC244157.2-201ENST00000616239 1006 ntBASIC11.65□□□□□ -0.54
CDX1P47902 MIR6869-201ENST00000619434 62 ntBASIC11.65□□□□□ -0.54
CDX1P47902 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
CDX1P47902 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.54
CDX1P47902 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CDX1P47902 TIPARP-201ENST00000295924 4109 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CDX1P47902 AP000593.2-201ENST00000542775 1433 ntBASIC11.65□□□□□ -0.54
CDX1P47902 VWA5B2-201ENST00000273794 3486 ntTSL 2 BASIC11.65□□□□□ -0.54
CDX1P47902 FLAD1-207ENST00000368433 2656 ntTSL 2 BASIC11.65□□□□□ -0.54
CDX1P47902 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.54
CDX1P47902 DNAJB12-201ENST00000338820 4360 ntTSL 2 BASIC11.65□□□□□ -0.54
CDX1P47902 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC11.65□□□□□ -0.54
CDX1P47902 AL033529.1-201ENST00000480336 3447 ntAPPRIS P1 TSL 2 BASIC11.65□□□□□ -0.54
CDX1P47902 GRM1-202ENST00000355289 3874 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
CDX1P47902 TEX35-204ENST00000367642 2452 ntAPPRIS ALT2 TSL 5 BASIC11.65□□□□□ -0.54
CDX1P47902 FCHSD1-209ENST00000522783 2477 ntTSL 5 BASIC11.65□□□□□ -0.54
CDX1P47902 DHX58-201ENST00000251642 2617 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CDX1P47902 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
CDX1P47902 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
CDX1P47902 ARAP1-202ENST00000359373 5767 ntAPPRIS ALT2 TSL 2 BASIC11.65□□□□□ -0.55
CDX1P47902 SUPT7L-203ENST00000405491 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC11.65□□□□□ -0.55
CDX1P47902 PDE2A-218ENST00000540345 3027 ntTSL 1 (best) BASIC11.65□□□□□ -0.55
CDX1P47902 SNCA-204ENST00000394989 3167 ntTSL 1 (best) BASIC11.65□□□□□ -0.55
CDX1P47902 TAX1BP1-207ENST00000433216 3174 ntTSL 2 BASIC11.65□□□□□ -0.55
CDX1P47902 KDM2B-215ENST00000542973 3170 ntTSL 2 BASIC11.65□□□□□ -0.55
CDX1P47902 SPTBN2-204ENST00000529997 8085 ntTSL 5 BASIC11.64□□□□□ -0.55
CDX1P47902 ZMIZ2-206ENST00000441627 5089 ntAPPRIS P4 TSL 1 (best) BASIC11.64□□□□□ -0.55
CDX1P47902 DQX1-202ENST00000404568 2689 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
CDX1P47902 CALB1-201ENST00000265431 2533 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms