Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 DRD3-202ENST00000383673 1640 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
SMARCA1P28370 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
SMARCA1P28370 YWHAE-201ENST00000264335 2211 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SMARCA1P28370 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SMARCA1P28370 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SMARCA1P28370 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SMARCA1P28370 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
SMARCA1P28370 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC16.04■□□□□ 0.16
SMARCA1P28370 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SMARCA1P28370 C12orf76-201ENST00000309050 1964 ntTSL 2 BASIC16.04■□□□□ 0.16
SMARCA1P28370 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
SMARCA1P28370 ABCF3-201ENST00000292808 2453 ntAPPRIS ALT1 TSL 2 BASIC16.04■□□□□ 0.16
SMARCA1P28370 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SMARCA1P28370 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC16.04■□□□□ 0.16
SMARCA1P28370 RDH12-203ENST00000551171 1879 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SMARCA1P28370 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SMARCA1P28370 WDR46-231ENST00000374617 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SMARCA1P28370 PGAM2-201ENST00000297283 857 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SMARCA1P28370 APOD-201ENST00000343267 1130 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
SMARCA1P28370 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SMARCA1P28370 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SMARCA1P28370 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC16.04■□□□□ 0.16
SMARCA1P28370 AC112721.1-201ENST00000409162 588 ntTSL 3 BASIC16.04■□□□□ 0.16
SMARCA1P28370 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SMARCA1P28370 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC16.04■□□□□ 0.16
SMARCA1P28370 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC16.04■□□□□ 0.16
SMARCA1P28370 AC006529.1-201ENST00000459978 637 ntBASIC16.04■□□□□ 0.16
SMARCA1P28370 LAMTOR4-209ENST00000488241 613 ntTSL 2 BASIC16.04■□□□□ 0.16
SMARCA1P28370 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC16.04■□□□□ 0.16
SMARCA1P28370 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC16.04■□□□□ 0.16
SMARCA1P28370 RMDN1-218ENST00000523911 950 ntTSL 2 BASIC16.04■□□□□ 0.16
SMARCA1P28370 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC16.04■□□□□ 0.16
SMARCA1P28370 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC16.04■□□□□ 0.16
SMARCA1P28370 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC16.04■□□□□ 0.16
SMARCA1P28370 AL132994.1-201ENST00000554098 400 ntBASIC16.04■□□□□ 0.16
SMARCA1P28370 BATF-202ENST00000555504 361 ntTSL 2 BASIC16.04■□□□□ 0.16
SMARCA1P28370 ADSSL1-208ENST00000555674 520 ntTSL 3 BASIC16.04■□□□□ 0.16
SMARCA1P28370 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
SMARCA1P28370 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SMARCA1P28370 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC16.04■□□□□ 0.16
SMARCA1P28370 AC005041.3-201ENST00000606287 649 ntBASIC16.04■□□□□ 0.16
SMARCA1P28370 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC16.04■□□□□ 0.16
SMARCA1P28370 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC16.04■□□□□ 0.16
SMARCA1P28370 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SMARCA1P28370 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC16.04■□□□□ 0.16
SMARCA1P28370 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC16.04■□□□□ 0.16
SMARCA1P28370 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
SMARCA1P28370 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC16.04■□□□□ 0.16
SMARCA1P28370 AC041040.2-201ENST00000622926 2899 ntBASIC16.04■□□□□ 0.16
SMARCA1P28370 FAM90A12P-201ENST00000519497 2375 ntBASIC16.04■□□□□ 0.16
SMARCA1P28370 FAM90A24P-201ENST00000520792 2369 ntBASIC16.04■□□□□ 0.16
SMARCA1P28370 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
SMARCA1P28370 PRKACB-205ENST00000370688 1905 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SMARCA1P28370 LILRB2-202ENST00000391746 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
SMARCA1P28370 MORN4-201ENST00000307450 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SMARCA1P28370 RCC2P5-201ENST00000492126 1487 ntBASIC16.03■□□□□ 0.16
SMARCA1P28370 LINC00969-231ENST00000597482 1476 ntTSL 5 BASIC16.03■□□□□ 0.16
SMARCA1P28370 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC16.03■□□□□ 0.16
SMARCA1P28370 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC16.03■□□□□ 0.16
SMARCA1P28370 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
SMARCA1P28370 TCP11L1-209ENST00000531632 1898 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
SMARCA1P28370 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
SMARCA1P28370 AC117503.4-201ENST00000623229 1418 ntBASIC16.03■□□□□ 0.16
SMARCA1P28370 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SMARCA1P28370 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SMARCA1P28370 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SMARCA1P28370 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SMARCA1P28370 SPDYA-202ENST00000379579 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SMARCA1P28370 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SMARCA1P28370 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC16.03■□□□□ 0.16
SMARCA1P28370 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SMARCA1P28370 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SMARCA1P28370 AC040160.2-201ENST00000623816 1675 ntBASIC16.03■□□□□ 0.16
SMARCA1P28370 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC16.03■□□□□ 0.16
SMARCA1P28370 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SMARCA1P28370 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SMARCA1P28370 RN7SKP109-201ENST00000410592 316 ntBASIC16.03■□□□□ 0.16
SMARCA1P28370 RPSAP31-201ENST00000416648 895 ntBASIC16.03■□□□□ 0.16
SMARCA1P28370 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC16.03■□□□□ 0.16
SMARCA1P28370 AP001596.1-201ENST00000429340 781 ntTSL 5 BASIC16.03■□□□□ 0.16
SMARCA1P28370 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC16.03■□□□□ 0.16
SMARCA1P28370 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC16.03■□□□□ 0.16
SMARCA1P28370 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC16.03■□□□□ 0.16
SMARCA1P28370 KRT18P62-201ENST00000446618 1287 ntBASIC16.03■□□□□ 0.16
SMARCA1P28370 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
SMARCA1P28370 MIR3180-2-201ENST00000581748 88 ntBASIC16.03■□□□□ 0.16
SMARCA1P28370 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC16.03■□□□□ 0.16
SMARCA1P28370 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC16.03■□□□□ 0.16
SMARCA1P28370 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
SMARCA1P28370 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SMARCA1P28370 AL359845.1-201ENST00000458202 1648 ntBASIC16.03■□□□□ 0.16
SMARCA1P28370 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SMARCA1P28370 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SMARCA1P28370 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
SMARCA1P28370 AC009474.1-201ENST00000455096 1565 ntBASIC16.03■□□□□ 0.16
SMARCA1P28370 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC16.03■□□□□ 0.16
SMARCA1P28370 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
SMARCA1P28370 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
SMARCA1P28370 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SMARCA1P28370 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 58.1 ms