Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL5A1P20908 RIBC1-202ENST00000375327 1420 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL5A1P20908 AC007431.1-201ENST00000578662 1412 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
COL5A1P20908 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL5A1P20908 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL5A1P20908 OS9-207ENST00000439210 1946 ntTSL 2 BASIC13.11□□□□□ -0.31
COL5A1P20908 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL5A1P20908 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC13.11□□□□□ -0.31
COL5A1P20908 UBIAD1-201ENST00000376804 825 ntTSL 2 BASIC13.11□□□□□ -0.31
COL5A1P20908 AL391647.1-201ENST00000395664 511 ntBASIC13.11□□□□□ -0.31
COL5A1P20908 POLR3H-204ENST00000407461 802 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL5A1P20908 AHCYP3-201ENST00000420053 1279 ntBASIC13.11□□□□□ -0.31
COL5A1P20908 AC007383.2-201ENST00000420509 752 ntTSL 2 BASIC13.11□□□□□ -0.31
COL5A1P20908 HNF1A-AS1-201ENST00000433033 612 ntTSL 3 BASIC13.11□□□□□ -0.31
COL5A1P20908 IP6K2-223ENST00000453202 571 ntTSL 4 BASIC13.11□□□□□ -0.31
COL5A1P20908 AC113398.1-201ENST00000464124 406 ntBASIC13.11□□□□□ -0.31
COL5A1P20908 AL136040.1-201ENST00000557775 601 ntTSL 3 BASIC13.11□□□□□ -0.31
COL5A1P20908 AIPL1-210ENST00000576307 1077 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
COL5A1P20908 AC003070.1-201ENST00000592389 457 ntTSL 2 BASIC13.11□□□□□ -0.31
COL5A1P20908 RPS5-205ENST00000598495 800 ntTSL 3 BASIC13.11□□□□□ -0.31
COL5A1P20908 NRSN2-206ENST00000608736 712 ntTSL 3 BASIC13.11□□□□□ -0.31
COL5A1P20908 BX322562.1-201ENST00000617004 561 ntBASIC13.11□□□□□ -0.31
COL5A1P20908 AP003900.1-201ENST00000622592 859 ntTSL 3 BASIC13.11□□□□□ -0.31
COL5A1P20908 AL353658.2-201ENST00000629794 519 ntTSL 5 BASIC13.11□□□□□ -0.31
COL5A1P20908 ERAS-202ENST00000636362 826 ntAPPRIS P1 TSL 3 BASIC13.11□□□□□ -0.31
COL5A1P20908 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL5A1P20908 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC13.11□□□□□ -0.31
COL5A1P20908 LINC01002-209ENST00000631858 1761 ntTSL 2 BASIC13.11□□□□□ -0.31
COL5A1P20908 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC13.11□□□□□ -0.31
COL5A1P20908 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL5A1P20908 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL5A1P20908 PLAT-211ENST00000524009 1613 ntTSL 2 BASIC13.11□□□□□ -0.31
COL5A1P20908 OS9-220ENST00000552285 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL5A1P20908 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL5A1P20908 CHRNA2-207ENST00000520933 2497 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
COL5A1P20908 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL5A1P20908 AC061965.1-201ENST00000560524 1465 ntBASIC13.11□□□□□ -0.31
COL5A1P20908 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC13.11□□□□□ -0.31
COL5A1P20908 LINC01658-201ENST00000320372 1578 ntTSL 2 BASIC13.11□□□□□ -0.31
COL5A1P20908 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL5A1P20908 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC13.11□□□□□ -0.31
COL5A1P20908 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
COL5A1P20908 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL5A1P20908 MMP19-202ENST00000409200 1431 ntTSL 2 BASIC13.11□□□□□ -0.31
COL5A1P20908 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
COL5A1P20908 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC13.11□□□□□ -0.31
COL5A1P20908 TUBAL3-201ENST00000380419 1798 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL5A1P20908 GOLGA8IP-202ENST00000611635 2100 ntBASIC13.11□□□□□ -0.31
COL5A1P20908 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
COL5A1P20908 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC13.11□□□□□ -0.31
COL5A1P20908 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC13.11□□□□□ -0.31
COL5A1P20908 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
COL5A1P20908 AK6-202ENST00000380822 1648 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL5A1P20908 SLC25A5-201ENST00000317881 1274 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL5A1P20908 MRPL55-219ENST00000391867 685 ntAPPRIS P1 TSL 3 BASIC13.11□□□□□ -0.31
COL5A1P20908 SNORA50D-201ENST00000408059 134 ntBASIC13.11□□□□□ -0.31
COL5A1P20908 FAM197Y6-201ENST00000420524 766 ntBASIC13.11□□□□□ -0.31
COL5A1P20908 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC13.11□□□□□ -0.31
COL5A1P20908 AL390961.2-201ENST00000454991 472 ntTSL 3 BASIC13.11□□□□□ -0.31
COL5A1P20908 TPT1P6-201ENST00000458298 514 ntBASIC13.11□□□□□ -0.31
COL5A1P20908 AC004889.1-201ENST00000498693 856 ntTSL 5 BASIC13.11□□□□□ -0.31
COL5A1P20908 AC009120.2-205ENST00000561921 490 ntTSL 3 BASIC13.11□□□□□ -0.31
COL5A1P20908 AC006986.1-201ENST00000612764 241 ntBASIC13.11□□□□□ -0.31
COL5A1P20908 PSME2-217ENST00000615264 874 ntTSL 5 BASIC13.11□□□□□ -0.31
COL5A1P20908 ZFAS1-208ENST00000618800 597 ntTSL 3 BASIC13.11□□□□□ -0.31
COL5A1P20908 PSME2-218ENST00000630027 185 ntTSL 3 BASIC13.11□□□□□ -0.31
COL5A1P20908 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
COL5A1P20908 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
COL5A1P20908 INTS4P1-203ENST00000641008 3683 ntBASIC13.11□□□□□ -0.31
COL5A1P20908 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
COL5A1P20908 HLF-202ENST00000430986 1385 ntTSL 2 BASIC13.11□□□□□ -0.31
COL5A1P20908 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL5A1P20908 LPGAT1-201ENST00000366996 2035 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL5A1P20908 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL5A1P20908 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL5A1P20908 FAM83A-AS1-202ENST00000520576 1347 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
COL5A1P20908 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
COL5A1P20908 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL5A1P20908 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC13.1□□□□□ -0.31
COL5A1P20908 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL5A1P20908 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
COL5A1P20908 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
COL5A1P20908 S100B-201ENST00000291700 877 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL5A1P20908 OLA1P2-201ENST00000395519 1264 ntBASIC13.1□□□□□ -0.31
COL5A1P20908 FTH1P18-201ENST00000412071 549 ntBASIC13.1□□□□□ -0.31
COL5A1P20908 DLGAP4-AS1-203ENST00000439595 1207 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
COL5A1P20908 RHOQP2-201ENST00000449922 579 ntBASIC13.1□□□□□ -0.31
COL5A1P20908 AC140847.2-201ENST00000545923 501 ntTSL 3 BASIC13.1□□□□□ -0.31
COL5A1P20908 ZNF235-203ENST00000589248 532 ntTSL 3 BASIC13.1□□□□□ -0.31
COL5A1P20908 RAB11B-205ENST00000601897 577 ntTSL 3 BASIC13.1□□□□□ -0.31
COL5A1P20908 AC021146.12-201ENST00000608365 477 ntTSL 2 BASIC13.1□□□□□ -0.31
COL5A1P20908 AP000553.2-201ENST00000609038 441 ntBASIC13.1□□□□□ -0.31
COL5A1P20908 AL513478.2-202ENST00000621949 835 ntTSL 3 BASIC13.1□□□□□ -0.31
COL5A1P20908 EPB42-203ENST00000540029 2098 ntTSL 2 BASIC13.1□□□□□ -0.31
COL5A1P20908 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL5A1P20908 AC023794.5-201ENST00000564380 2157 ntBASIC13.1□□□□□ -0.31
COL5A1P20908 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL5A1P20908 ANXA3-202ENST00000503570 1524 ntTSL 5 BASIC13.1□□□□□ -0.31
COL5A1P20908 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC13.1□□□□□ -0.31
COL5A1P20908 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC13.1□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms