Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 SCGB1B2P-201ENST00000595013 612 ntTSL 2 BASIC14.43□□□□□ -0.1
HMGA1P17096 NMRK2-204ENST00000599576 691 ntTSL 3 BASIC14.43□□□□□ -0.1
HMGA1P17096 AL135936.1-201ENST00000617956 998 ntTSL 5 BASIC14.43□□□□□ -0.1
HMGA1P17096 AC073578.2-201ENST00000618927 464 ntTSL 4 BASIC14.43□□□□□ -0.1
HMGA1P17096 STAG3L1-204ENST00000619870 1192 ntTSL 2 BASIC14.43□□□□□ -0.1
HMGA1P17096 AC126755.5-201ENST00000622756 267 ntBASIC14.43□□□□□ -0.1
HMGA1P17096 LINC01869-204ENST00000635639 1047 ntTSL 5 BASIC14.43□□□□□ -0.1
HMGA1P17096 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HMGA1P17096 TUBA1B-202ENST00000336023 1627 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGA1P17096 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGA1P17096 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGA1P17096 EPB42-203ENST00000540029 2098 ntTSL 2 BASIC14.43□□□□□ -0.1
HMGA1P17096 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC14.43□□□□□ -0.1
HMGA1P17096 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGA1P17096 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HMGA1P17096 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGA1P17096 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGA1P17096 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
HMGA1P17096 KRT8P24-201ENST00000560290 1559 ntBASIC14.43□□□□□ -0.1
HMGA1P17096 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGA1P17096 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGA1P17096 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGA1P17096 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGA1P17096 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGA1P17096 MARCH9-202ENST00000548358 1668 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HMGA1P17096 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC14.42□□□□□ -0.1
HMGA1P17096 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HMGA1P17096 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
HMGA1P17096 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HMGA1P17096 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
HMGA1P17096 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HMGA1P17096 COQ4-201ENST00000300452 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HMGA1P17096 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
HMGA1P17096 AGAP10P-201ENST00000454844 2418 ntBASIC14.42□□□□□ -0.1
HMGA1P17096 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HMGA1P17096 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC14.42□□□□□ -0.1
HMGA1P17096 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
HMGA1P17096 NEK3-210ENST00000620675 2072 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
HMGA1P17096 MYO15B-237ENST00000642007 4893 ntBASIC14.42□□□□□ -0.1
HMGA1P17096 AC006372.2-201ENST00000433660 292 ntTSL 3 BASIC14.42□□□□□ -0.1
HMGA1P17096 ASS1P2-201ENST00000439895 1223 ntBASIC14.42□□□□□ -0.1
HMGA1P17096 AC079250.1-201ENST00000456046 531 ntBASIC14.42□□□□□ -0.1
HMGA1P17096 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
HMGA1P17096 TMEM14B-208ENST00000467317 1224 ntTSL 2 BASIC14.42□□□□□ -0.1
HMGA1P17096 ALG1L3P-201ENST00000503331 765 ntBASIC14.42□□□□□ -0.1
HMGA1P17096 AC022113.2-201ENST00000504935 704 ntTSL 3 BASIC14.42□□□□□ -0.1
HMGA1P17096 AL162632.1-201ENST00000546784 548 ntTSL 4 BASIC14.42□□□□□ -0.1
HMGA1P17096 THY1-209ENST00000580275 578 ntTSL 3 BASIC14.42□□□□□ -0.1
HMGA1P17096 AC010632.2-201ENST00000588369 1224 ntBASIC14.42□□□□□ -0.1
HMGA1P17096 AC073869.4-201ENST00000620841 800 ntBASIC14.42□□□□□ -0.1
HMGA1P17096 Metazoa_SRP.157-201ENST00000622819 262 ntBASIC14.42□□□□□ -0.1
HMGA1P17096 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC14.42□□□□□ -0.1
HMGA1P17096 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
HMGA1P17096 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
HMGA1P17096 RCC2P5-201ENST00000492126 1487 ntBASIC14.42□□□□□ -0.1
HMGA1P17096 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
HMGA1P17096 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HMGA1P17096 LRRFIP1-202ENST00000289175 3709 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
HMGA1P17096 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
HMGA1P17096 TMEM182-201ENST00000409173 3198 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HMGA1P17096 RDX-218ENST00000544551 4117 ntTSL 2 BASIC14.42□□□□□ -0.1
HMGA1P17096 YIPF1-201ENST00000072644 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HMGA1P17096 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
HMGA1P17096 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HMGA1P17096 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC14.42□□□□□ -0.1
HMGA1P17096 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
HMGA1P17096 LINC01230-201ENST00000625222 3017 ntBASIC14.41□□□□□ -0.1
HMGA1P17096 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
HMGA1P17096 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
HMGA1P17096 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGA1P17096 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HMGA1P17096 DNAJB6-204ENST00000429029 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGA1P17096 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
HMGA1P17096 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC14.41□□□□□ -0.1
HMGA1P17096 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC14.41□□□□□ -0.1
HMGA1P17096 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGA1P17096 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGA1P17096 ACTN1-205ENST00000538545 2813 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HMGA1P17096 C17orf80-202ENST00000268942 3449 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGA1P17096 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGA1P17096 ATP5C1-201ENST00000335698 1078 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGA1P17096 MORN2-201ENST00000340556 741 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGA1P17096 ASNA1-201ENST00000357332 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGA1P17096 RHOC-205ENST00000369636 786 ntTSL 2 BASIC14.41□□□□□ -0.1
HMGA1P17096 RHOC-207ENST00000369638 1028 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
HMGA1P17096 SFMBT2-202ENST00000379711 692 ntTSL 5 BASIC14.41□□□□□ -0.1
HMGA1P17096 AL589935.1-203ENST00000412751 465 ntTSL 3 BASIC14.41□□□□□ -0.1
HMGA1P17096 KRT18P4-201ENST00000422599 1288 ntBASIC14.41□□□□□ -0.1
HMGA1P17096 AP000244.1-201ENST00000424582 201 ntBASIC14.41□□□□□ -0.1
HMGA1P17096 KRT17P4-201ENST00000429445 819 ntBASIC14.41□□□□□ -0.1
HMGA1P17096 AL158166.1-201ENST00000433110 371 ntTSL 2 BASIC14.41□□□□□ -0.1
HMGA1P17096 AL121656.1-201ENST00000440786 482 ntTSL 5 BASIC14.41□□□□□ -0.1
HMGA1P17096 AC113391.2-201ENST00000512245 553 ntTSL 4 BASIC14.41□□□□□ -0.1
HMGA1P17096 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC14.41□□□□□ -0.1
HMGA1P17096 FAM86B3P-203ENST00000523992 854 ntBASIC14.41□□□□□ -0.1
HMGA1P17096 C12orf57-204ENST00000540506 551 ntTSL 2 BASIC14.41□□□□□ -0.1
HMGA1P17096 AL022344.2-201ENST00000568976 968 ntBASIC14.41□□□□□ -0.1
HMGA1P17096 LINC01569-203ENST00000573268 694 ntTSL 3 BASIC14.41□□□□□ -0.1
HMGA1P17096 AC090004.1-201ENST00000608606 653 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
HMGA1P17096 AC026120.2-201ENST00000617239 309 ntBASIC14.41□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 64.8 ms