Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
LRFN1Q9P244 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
LRFN1Q9P244 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
LRFN1Q9P244 RPL13AP3-202ENST00000494676 1473 ntBASIC13□□□□□ -0.33
LRFN1Q9P244 AL590824.1-201ENST00000403828 1349 ntBASIC13□□□□□ -0.33
LRFN1Q9P244 NHSL1-202ENST00000343505 6535 ntAPPRIS P3 TSL 5 BASIC13□□□□□ -0.33
LRFN1Q9P244 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
LRFN1Q9P244 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC13□□□□□ -0.33
LRFN1Q9P244 USP17L6P-201ENST00000382470 1197 ntBASIC13□□□□□ -0.33
LRFN1Q9P244 AC103592.1-201ENST00000394513 664 ntBASIC13□□□□□ -0.33
LRFN1Q9P244 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC13□□□□□ -0.33
LRFN1Q9P244 HIST2H2BA-201ENST00000412169 381 ntBASIC13□□□□□ -0.33
LRFN1Q9P244 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC13□□□□□ -0.33
LRFN1Q9P244 GUSBP10-201ENST00000417412 665 ntBASIC13□□□□□ -0.33
LRFN1Q9P244 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC13□□□□□ -0.33
LRFN1Q9P244 AC018638.5-201ENST00000450885 754 ntBASIC13□□□□□ -0.33
LRFN1Q9P244 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC13□□□□□ -0.33
LRFN1Q9P244 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC13□□□□□ -0.33
LRFN1Q9P244 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC13□□□□□ -0.33
LRFN1Q9P244 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC13□□□□□ -0.33
LRFN1Q9P244 AP003398.1-201ENST00000531124 318 ntBASIC13□□□□□ -0.33
LRFN1Q9P244 OR5BD1P-201ENST00000532527 817 ntBASIC13□□□□□ -0.33
LRFN1Q9P244 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC13□□□□□ -0.33
LRFN1Q9P244 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC13□□□□□ -0.33
LRFN1Q9P244 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
LRFN1Q9P244 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
LRFN1Q9P244 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC13□□□□□ -0.33
LRFN1Q9P244 RN7SL470P-201ENST00000583069 259 ntBASIC13□□□□□ -0.33
LRFN1Q9P244 MIR2392-201ENST00000584881 84 ntBASIC13□□□□□ -0.33
LRFN1Q9P244 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
LRFN1Q9P244 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC13□□□□□ -0.33
LRFN1Q9P244 AC005618.3-201ENST00000624928 458 ntBASIC13□□□□□ -0.33
LRFN1Q9P244 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
LRFN1Q9P244 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC13□□□□□ -0.33
LRFN1Q9P244 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
LRFN1Q9P244 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC13□□□□□ -0.33
LRFN1Q9P244 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC13□□□□□ -0.33
LRFN1Q9P244 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
LRFN1Q9P244 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
LRFN1Q9P244 SMC5-201ENST00000361138 5980 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
LRFN1Q9P244 ALX4-201ENST00000329255 5750 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
LRFN1Q9P244 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
LRFN1Q9P244 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC13□□□□□ -0.33
LRFN1Q9P244 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC13□□□□□ -0.33
LRFN1Q9P244 ALDH7A1-201ENST00000409134 4964 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
LRFN1Q9P244 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC13□□□□□ -0.33
LRFN1Q9P244 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
LRFN1Q9P244 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC12.99□□□□□ -0.33
LRFN1Q9P244 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
LRFN1Q9P244 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
LRFN1Q9P244 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
LRFN1Q9P244 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
LRFN1Q9P244 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC12.99□□□□□ -0.33
LRFN1Q9P244 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
LRFN1Q9P244 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC12.99□□□□□ -0.33
LRFN1Q9P244 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
LRFN1Q9P244 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC12.99□□□□□ -0.33
LRFN1Q9P244 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC12.99□□□□□ -0.33
LRFN1Q9P244 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
LRFN1Q9P244 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
LRFN1Q9P244 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC12.99□□□□□ -0.33
LRFN1Q9P244 AC012617.1-204ENST00000586340 2305 ntBASIC12.99□□□□□ -0.33
LRFN1Q9P244 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
LRFN1Q9P244 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
LRFN1Q9P244 FAM171B-201ENST00000304698 5826 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
LRFN1Q9P244 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
LRFN1Q9P244 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
LRFN1Q9P244 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
LRFN1Q9P244 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC12.99□□□□□ -0.33
LRFN1Q9P244 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC12.99□□□□□ -0.33
LRFN1Q9P244 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
LRFN1Q9P244 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC12.99□□□□□ -0.33
LRFN1Q9P244 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC12.99□□□□□ -0.33
LRFN1Q9P244 AL354861.1-201ENST00000445213 355 ntBASIC12.99□□□□□ -0.33
LRFN1Q9P244 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC12.99□□□□□ -0.33
LRFN1Q9P244 SCARNA12-201ENST00000459155 270 ntBASIC12.99□□□□□ -0.33
LRFN1Q9P244 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
LRFN1Q9P244 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC12.99□□□□□ -0.33
LRFN1Q9P244 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC12.99□□□□□ -0.33
LRFN1Q9P244 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC12.99□□□□□ -0.33
LRFN1Q9P244 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
LRFN1Q9P244 AC145285.5-201ENST00000562217 361 ntBASIC12.99□□□□□ -0.33
LRFN1Q9P244 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC12.99□□□□□ -0.33
LRFN1Q9P244 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
LRFN1Q9P244 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC12.99□□□□□ -0.33
LRFN1Q9P244 AC009145.4-201ENST00000625119 1294 ntBASIC12.99□□□□□ -0.33
LRFN1Q9P244 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
LRFN1Q9P244 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC12.99□□□□□ -0.33
LRFN1Q9P244 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC12.99□□□□□ -0.33
LRFN1Q9P244 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
LRFN1Q9P244 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
LRFN1Q9P244 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
LRFN1Q9P244 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
LRFN1Q9P244 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC12.99□□□□□ -0.33
LRFN1Q9P244 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
LRFN1Q9P244 ARHGEF17-201ENST00000263674 7853 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
LRFN1Q9P244 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
LRFN1Q9P244 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC12.99□□□□□ -0.33
LRFN1Q9P244 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC12.99□□□□□ -0.33
LRFN1Q9P244 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 108.2 ms