Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC20.27■□□□□ 0.84
HIF3AQ9Y2N7 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HIF3AQ9Y2N7 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC20.27■□□□□ 0.84
HIF3AQ9Y2N7 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC20.27■□□□□ 0.84
HIF3AQ9Y2N7 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
HIF3AQ9Y2N7 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.27■□□□□ 0.84
HIF3AQ9Y2N7 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC20.27■□□□□ 0.83
HIF3AQ9Y2N7 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.83
HIF3AQ9Y2N7 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
HIF3AQ9Y2N7 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
HIF3AQ9Y2N7 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
HIF3AQ9Y2N7 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HIF3AQ9Y2N7 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HIF3AQ9Y2N7 REST-206ENST00000612429 1376 ntTSL 5 BASIC20.26■□□□□ 0.83
HIF3AQ9Y2N7 REST-207ENST00000616975 1370 ntTSL 5 BASIC20.26■□□□□ 0.83
HIF3AQ9Y2N7 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HIF3AQ9Y2N7 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HIF3AQ9Y2N7 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
HIF3AQ9Y2N7 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HIF3AQ9Y2N7 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC20.26■□□□□ 0.83
HIF3AQ9Y2N7 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
HIF3AQ9Y2N7 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
HIF3AQ9Y2N7 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC20.26■□□□□ 0.83
HIF3AQ9Y2N7 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HIF3AQ9Y2N7 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
HIF3AQ9Y2N7 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
HIF3AQ9Y2N7 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HIF3AQ9Y2N7 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HIF3AQ9Y2N7 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC20.25■□□□□ 0.83
HIF3AQ9Y2N7 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HIF3AQ9Y2N7 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HIF3AQ9Y2N7 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HIF3AQ9Y2N7 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
HIF3AQ9Y2N7 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC20.25■□□□□ 0.83
HIF3AQ9Y2N7 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.25■□□□□ 0.83
HIF3AQ9Y2N7 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.83
HIF3AQ9Y2N7 GALC-202ENST00000393568 2054 ntTSL 2 BASIC20.25■□□□□ 0.83
HIF3AQ9Y2N7 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
HIF3AQ9Y2N7 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
HIF3AQ9Y2N7 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC20.24■□□□□ 0.83
HIF3AQ9Y2N7 AC021242.3-201ENST00000607598 1377 ntBASIC20.24■□□□□ 0.83
HIF3AQ9Y2N7 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HIF3AQ9Y2N7 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
HIF3AQ9Y2N7 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HIF3AQ9Y2N7 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
HIF3AQ9Y2N7 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC20.24■□□□□ 0.83
HIF3AQ9Y2N7 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC20.24■□□□□ 0.83
HIF3AQ9Y2N7 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HIF3AQ9Y2N7 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HIF3AQ9Y2N7 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC20.24■□□□□ 0.83
HIF3AQ9Y2N7 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
HIF3AQ9Y2N7 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HIF3AQ9Y2N7 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HIF3AQ9Y2N7 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
HIF3AQ9Y2N7 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
HIF3AQ9Y2N7 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HIF3AQ9Y2N7 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HIF3AQ9Y2N7 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HIF3AQ9Y2N7 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC20.23■□□□□ 0.83
HIF3AQ9Y2N7 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HIF3AQ9Y2N7 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC20.23■□□□□ 0.83
HIF3AQ9Y2N7 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20.23■□□□□ 0.83
HIF3AQ9Y2N7 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HIF3AQ9Y2N7 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
HIF3AQ9Y2N7 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC20.23■□□□□ 0.83
HIF3AQ9Y2N7 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HIF3AQ9Y2N7 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HIF3AQ9Y2N7 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
HIF3AQ9Y2N7 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
HIF3AQ9Y2N7 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC20.22■□□□□ 0.83
HIF3AQ9Y2N7 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HIF3AQ9Y2N7 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC20.22■□□□□ 0.83
HIF3AQ9Y2N7 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HIF3AQ9Y2N7 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC20.22■□□□□ 0.83
HIF3AQ9Y2N7 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC20.22■□□□□ 0.83
HIF3AQ9Y2N7 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
HIF3AQ9Y2N7 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HIF3AQ9Y2N7 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HIF3AQ9Y2N7 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
HIF3AQ9Y2N7 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HIF3AQ9Y2N7 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC20.21■□□□□ 0.83
HIF3AQ9Y2N7 BX664725.1-201ENST00000438252 379 ntBASIC20.21■□□□□ 0.83
HIF3AQ9Y2N7 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HIF3AQ9Y2N7 PRTG-204ENST00000561292 833 ntTSL 3 BASIC20.21■□□□□ 0.83
HIF3AQ9Y2N7 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC20.21■□□□□ 0.83
HIF3AQ9Y2N7 MIR6722-201ENST00000617286 78 ntBASIC20.21■□□□□ 0.83
HIF3AQ9Y2N7 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC20.21■□□□□ 0.83
HIF3AQ9Y2N7 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HIF3AQ9Y2N7 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.21■□□□□ 0.83
HIF3AQ9Y2N7 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HIF3AQ9Y2N7 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HIF3AQ9Y2N7 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.83
HIF3AQ9Y2N7 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HIF3AQ9Y2N7 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HIF3AQ9Y2N7 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HIF3AQ9Y2N7 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.2■□□□□ 0.82
HIF3AQ9Y2N7 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HIF3AQ9Y2N7 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
HIF3AQ9Y2N7 C1orf229-201ENST00000623686 2258 ntBASIC20.2■□□□□ 0.82
HIF3AQ9Y2N7 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 15.4 ms