Protein–RNA interactions for Protein: Q9NXR1

NDE1, Nuclear distribution protein nudE homolog 1, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1Q9NXR1 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NDE1Q9NXR1 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
NDE1Q9NXR1 MYB-221ENST00000527615 2381 ntTSL 5 BASIC21.72■■□□□ 1.07
NDE1Q9NXR1 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
NDE1Q9NXR1 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
NDE1Q9NXR1 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC21.71■■□□□ 1.07
NDE1Q9NXR1 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC21.71■■□□□ 1.07
NDE1Q9NXR1 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
NDE1Q9NXR1 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
NDE1Q9NXR1 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
NDE1Q9NXR1 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
NDE1Q9NXR1 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
NDE1Q9NXR1 AC090877.2-201ENST00000558441 1738 ntBASIC21.7■■□□□ 1.06
NDE1Q9NXR1 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
NDE1Q9NXR1 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC21.7■■□□□ 1.06
NDE1Q9NXR1 ECEL1P2-201ENST00000461596 1295 ntBASIC21.7■■□□□ 1.06
NDE1Q9NXR1 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
NDE1Q9NXR1 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
NDE1Q9NXR1 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.7■■□□□ 1.06
NDE1Q9NXR1 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.06
NDE1Q9NXR1 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
NDE1Q9NXR1 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC21.7■■□□□ 1.06
NDE1Q9NXR1 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
NDE1Q9NXR1 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
NDE1Q9NXR1 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
NDE1Q9NXR1 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
NDE1Q9NXR1 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC21.69■■□□□ 1.06
NDE1Q9NXR1 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
NDE1Q9NXR1 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
NDE1Q9NXR1 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
NDE1Q9NXR1 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC21.69■■□□□ 1.06
NDE1Q9NXR1 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC21.69■■□□□ 1.06
NDE1Q9NXR1 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
NDE1Q9NXR1 METRNL-202ENST00000570778 967 ntTSL 5 BASIC21.69■■□□□ 1.06
NDE1Q9NXR1 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
NDE1Q9NXR1 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
NDE1Q9NXR1 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
NDE1Q9NXR1 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
NDE1Q9NXR1 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
NDE1Q9NXR1 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
NDE1Q9NXR1 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
NDE1Q9NXR1 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC21.68■■□□□ 1.06
NDE1Q9NXR1 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC21.68■■□□□ 1.06
NDE1Q9NXR1 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC21.68■■□□□ 1.06
NDE1Q9NXR1 H19-210ENST00000439725 1929 ntTSL 2 BASIC21.68■■□□□ 1.06
NDE1Q9NXR1 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
NDE1Q9NXR1 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
NDE1Q9NXR1 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
NDE1Q9NXR1 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
NDE1Q9NXR1 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
NDE1Q9NXR1 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
NDE1Q9NXR1 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
NDE1Q9NXR1 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
NDE1Q9NXR1 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
NDE1Q9NXR1 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
NDE1Q9NXR1 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC21.67■■□□□ 1.06
NDE1Q9NXR1 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC21.67■■□□□ 1.06
NDE1Q9NXR1 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
NDE1Q9NXR1 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
NDE1Q9NXR1 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
NDE1Q9NXR1 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
NDE1Q9NXR1 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
NDE1Q9NXR1 GDI1-215ENST00000630693 786 ntTSL 4 BASIC21.67■■□□□ 1.06
NDE1Q9NXR1 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
NDE1Q9NXR1 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
NDE1Q9NXR1 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
NDE1Q9NXR1 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
NDE1Q9NXR1 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
NDE1Q9NXR1 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
NDE1Q9NXR1 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC21.66■■□□□ 1.06
NDE1Q9NXR1 MIR3648-2-201ENST00000581792 180 ntBASIC21.66■■□□□ 1.06
NDE1Q9NXR1 MIR3648-1-201ENST00000615959 180 ntBASIC21.66■■□□□ 1.06
NDE1Q9NXR1 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
NDE1Q9NXR1 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
NDE1Q9NXR1 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
NDE1Q9NXR1 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
NDE1Q9NXR1 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
NDE1Q9NXR1 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
NDE1Q9NXR1 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
NDE1Q9NXR1 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
NDE1Q9NXR1 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC21.65■■□□□ 1.06
NDE1Q9NXR1 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC21.65■■□□□ 1.06
NDE1Q9NXR1 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
NDE1Q9NXR1 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC21.65■■□□□ 1.06
NDE1Q9NXR1 MACF1-219ENST00000484793 834 ntTSL 2 BASIC21.65■■□□□ 1.06
NDE1Q9NXR1 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC21.65■■□□□ 1.06
NDE1Q9NXR1 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
NDE1Q9NXR1 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC21.65■■□□□ 1.06
NDE1Q9NXR1 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
NDE1Q9NXR1 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
NDE1Q9NXR1 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.64■■□□□ 1.06
NDE1Q9NXR1 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC21.64■■□□□ 1.06
NDE1Q9NXR1 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.06
NDE1Q9NXR1 GFER-205ENST00000569451 517 ntTSL 5 BASIC21.64■■□□□ 1.05
NDE1Q9NXR1 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
NDE1Q9NXR1 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC21.64■■□□□ 1.05
NDE1Q9NXR1 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.64■■□□□ 1.05
NDE1Q9NXR1 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
NDE1Q9NXR1 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC21.64■■□□□ 1.05
NDE1Q9NXR1 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms