Protein–RNA interactions for Protein: Q9H444

CHMP4B, Charged multivesicular body protein 4b, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4BQ9H444 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC28.38■■■□□ 2.13
CHMP4BQ9H444 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC28.38■■■□□ 2.13
CHMP4BQ9H444 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC28.38■■■□□ 2.13
CHMP4BQ9H444 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
CHMP4BQ9H444 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC28.37■■■□□ 2.13
CHMP4BQ9H444 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC28.37■■■□□ 2.13
CHMP4BQ9H444 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC28.37■■■□□ 2.13
CHMP4BQ9H444 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC28.37■■■□□ 2.13
CHMP4BQ9H444 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
CHMP4BQ9H444 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
CHMP4BQ9H444 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC28.37■■■□□ 2.13
CHMP4BQ9H444 AC010997.5-201ENST00000609182 354 ntBASIC28.37■■■□□ 2.13
CHMP4BQ9H444 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
CHMP4BQ9H444 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC28.37■■■□□ 2.13
CHMP4BQ9H444 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC28.37■■■□□ 2.13
CHMP4BQ9H444 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
CHMP4BQ9H444 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
CHMP4BQ9H444 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
CHMP4BQ9H444 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
CHMP4BQ9H444 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC28.35■■■□□ 2.13
CHMP4BQ9H444 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
CHMP4BQ9H444 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC28.35■■■□□ 2.13
CHMP4BQ9H444 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC28.35■■■□□ 2.13
CHMP4BQ9H444 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
CHMP4BQ9H444 AC068473.5-201ENST00000616428 2072 ntBASIC28.34■■■□□ 2.13
CHMP4BQ9H444 AC144652.1-201ENST00000609974 1624 ntBASIC28.34■■■□□ 2.13
CHMP4BQ9H444 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
CHMP4BQ9H444 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC28.34■■■□□ 2.13
CHMP4BQ9H444 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC28.34■■■□□ 2.13
CHMP4BQ9H444 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC28.34■■■□□ 2.13
CHMP4BQ9H444 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC28.34■■■□□ 2.13
CHMP4BQ9H444 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC28.33■■■□□ 2.13
CHMP4BQ9H444 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
CHMP4BQ9H444 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC28.33■■■□□ 2.13
CHMP4BQ9H444 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
CHMP4BQ9H444 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC28.33■■■□□ 2.13
CHMP4BQ9H444 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC28.33■■■□□ 2.13
CHMP4BQ9H444 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
CHMP4BQ9H444 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC28.33■■■□□ 2.13
CHMP4BQ9H444 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
CHMP4BQ9H444 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC28.33■■■□□ 2.12
CHMP4BQ9H444 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC28.33■■■□□ 2.12
CHMP4BQ9H444 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC28.32■■■□□ 2.12
CHMP4BQ9H444 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC28.32■■■□□ 2.12
CHMP4BQ9H444 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
CHMP4BQ9H444 TFPT-201ENST00000391757 774 ntTSL 5 BASIC28.32■■■□□ 2.12
CHMP4BQ9H444 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC28.32■■■□□ 2.12
CHMP4BQ9H444 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
CHMP4BQ9H444 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
CHMP4BQ9H444 FP325331.1-202ENST00000623531 1380 ntBASIC28.32■■■□□ 2.12
CHMP4BQ9H444 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC28.31■■■□□ 2.12
CHMP4BQ9H444 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
CHMP4BQ9H444 CD72-202ENST00000378430 585 ntTSL 3 BASIC28.31■■■□□ 2.12
CHMP4BQ9H444 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC28.31■■■□□ 2.12
CHMP4BQ9H444 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
CHMP4BQ9H444 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC28.31■■■□□ 2.12
CHMP4BQ9H444 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
CHMP4BQ9H444 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
CHMP4BQ9H444 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC28.3■■■□□ 2.12
CHMP4BQ9H444 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC28.3■■■□□ 2.12
CHMP4BQ9H444 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC28.3■■■□□ 2.12
CHMP4BQ9H444 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC28.3■■■□□ 2.12
CHMP4BQ9H444 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC28.3■■■□□ 2.12
CHMP4BQ9H444 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
CHMP4BQ9H444 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
CHMP4BQ9H444 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC28.29■■■□□ 2.12
CHMP4BQ9H444 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
CHMP4BQ9H444 HES6-204ENST00000409182 863 ntTSL 2 BASIC28.29■■■□□ 2.12
CHMP4BQ9H444 TSPY9P-201ENST00000440215 945 ntBASIC28.29■■■□□ 2.12
CHMP4BQ9H444 TSPY11P-201ENST00000442607 1045 ntBASIC28.29■■■□□ 2.12
CHMP4BQ9H444 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC28.29■■■□□ 2.12
CHMP4BQ9H444 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC28.29■■■□□ 2.12
CHMP4BQ9H444 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
CHMP4BQ9H444 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
CHMP4BQ9H444 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC28.28■■■□□ 2.12
CHMP4BQ9H444 AL035685.1-201ENST00000636663 812 ntBASIC28.28■■■□□ 2.12
CHMP4BQ9H444 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
CHMP4BQ9H444 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
CHMP4BQ9H444 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
CHMP4BQ9H444 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
CHMP4BQ9H444 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC28.27■■■□□ 2.12
CHMP4BQ9H444 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC28.27■■■□□ 2.12
CHMP4BQ9H444 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
CHMP4BQ9H444 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
CHMP4BQ9H444 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.12
CHMP4BQ9H444 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC28.26■■■□□ 2.12
CHMP4BQ9H444 AL353803.4-201ENST00000565882 1934 ntBASIC28.26■■■□□ 2.11
CHMP4BQ9H444 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
CHMP4BQ9H444 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
CHMP4BQ9H444 OR2A1-AS1-204ENST00000470435 602 ntBASIC28.26■■■□□ 2.11
CHMP4BQ9H444 CREM-229ENST00000474362 1030 ntTSL 2 BASIC28.26■■■□□ 2.11
CHMP4BQ9H444 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC28.26■■■□□ 2.11
CHMP4BQ9H444 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
CHMP4BQ9H444 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
CHMP4BQ9H444 ME2-208ENST00000638937 2471 ntTSL 5 BASIC28.26■■■□□ 2.11
CHMP4BQ9H444 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC28.25■■■□□ 2.11
CHMP4BQ9H444 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
CHMP4BQ9H444 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
CHMP4BQ9H444 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
CHMP4BQ9H444 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC28.25■■■□□ 2.11
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms