Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC19.53■□□□□ 0.72
NKX3-1Q99801 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
NKX3-1Q99801 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
NKX3-1Q99801 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
NKX3-1Q99801 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC19.53■□□□□ 0.72
NKX3-1Q99801 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
NKX3-1Q99801 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
NKX3-1Q99801 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC19.53■□□□□ 0.72
NKX3-1Q99801 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
NKX3-1Q99801 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
NKX3-1Q99801 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
NKX3-1Q99801 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
NKX3-1Q99801 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
NKX3-1Q99801 GUSBP5-202ENST00000510805 1989 ntBASIC19.52■□□□□ 0.72
NKX3-1Q99801 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
NKX3-1Q99801 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
NKX3-1Q99801 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC19.52■□□□□ 0.72
NKX3-1Q99801 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC19.52■□□□□ 0.72
NKX3-1Q99801 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
NKX3-1Q99801 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
NKX3-1Q99801 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
NKX3-1Q99801 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
NKX3-1Q99801 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC19.52■□□□□ 0.71
NKX3-1Q99801 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
NKX3-1Q99801 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
NKX3-1Q99801 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
NKX3-1Q99801 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
NKX3-1Q99801 GUK1-208ENST00000366728 842 ntTSL 2 BASIC19.51■□□□□ 0.71
NKX3-1Q99801 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC19.51■□□□□ 0.71
NKX3-1Q99801 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
NKX3-1Q99801 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
NKX3-1Q99801 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
NKX3-1Q99801 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
NKX3-1Q99801 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
NKX3-1Q99801 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
NKX3-1Q99801 ALDH1A3-203ENST00000557963 1670 ntBASIC19.5■□□□□ 0.71
NKX3-1Q99801 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
NKX3-1Q99801 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC19.5■□□□□ 0.71
NKX3-1Q99801 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
NKX3-1Q99801 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
NKX3-1Q99801 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC19.5■□□□□ 0.71
NKX3-1Q99801 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
NKX3-1Q99801 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC19.5■□□□□ 0.71
NKX3-1Q99801 AL161729.1-201ENST00000604104 1402 ntBASIC19.5■□□□□ 0.71
NKX3-1Q99801 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
NKX3-1Q99801 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
NKX3-1Q99801 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
NKX3-1Q99801 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
NKX3-1Q99801 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
NKX3-1Q99801 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
NKX3-1Q99801 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
NKX3-1Q99801 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC19.49■□□□□ 0.71
NKX3-1Q99801 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
NKX3-1Q99801 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
NKX3-1Q99801 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
NKX3-1Q99801 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
NKX3-1Q99801 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
NKX3-1Q99801 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
NKX3-1Q99801 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
NKX3-1Q99801 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
NKX3-1Q99801 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
NKX3-1Q99801 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
NKX3-1Q99801 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
NKX3-1Q99801 BHLHE23-202ENST00000612929 1109 ntBASIC19.48■□□□□ 0.71
NKX3-1Q99801 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC19.48■□□□□ 0.71
NKX3-1Q99801 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
NKX3-1Q99801 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
NKX3-1Q99801 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
NKX3-1Q99801 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
NKX3-1Q99801 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC19.48■□□□□ 0.71
NKX3-1Q99801 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC19.47■□□□□ 0.71
NKX3-1Q99801 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC19.47■□□□□ 0.71
NKX3-1Q99801 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
NKX3-1Q99801 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
NKX3-1Q99801 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
NKX3-1Q99801 LSR-203ENST00000360798 1963 ntTSL 2 BASIC19.47■□□□□ 0.71
NKX3-1Q99801 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC19.47■□□□□ 0.71
NKX3-1Q99801 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
NKX3-1Q99801 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
NKX3-1Q99801 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
NKX3-1Q99801 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC19.46■□□□□ 0.71
NKX3-1Q99801 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
NKX3-1Q99801 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
NKX3-1Q99801 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
NKX3-1Q99801 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
NKX3-1Q99801 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC19.46■□□□□ 0.71
NKX3-1Q99801 GAK-223ENST00000628912 497 ntTSL 5 BASIC19.46■□□□□ 0.71
NKX3-1Q99801 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC19.46■□□□□ 0.71
NKX3-1Q99801 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
NKX3-1Q99801 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC19.46■□□□□ 0.71
NKX3-1Q99801 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC19.46■□□□□ 0.71
NKX3-1Q99801 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
NKX3-1Q99801 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
NKX3-1Q99801 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
NKX3-1Q99801 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
NKX3-1Q99801 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
NKX3-1Q99801 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC19.45■□□□□ 0.7
NKX3-1Q99801 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
NKX3-1Q99801 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
NKX3-1Q99801 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms