Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC31.67■■■□□ 2.66
USP47Q96K76 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC31.67■■■□□ 2.66
USP47Q96K76 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC31.67■■■□□ 2.66
USP47Q96K76 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
USP47Q96K76 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC31.67■■■□□ 2.66
USP47Q96K76 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC31.67■■■□□ 2.66
USP47Q96K76 AC006455.2-201ENST00000429931 906 ntBASIC31.67■■■□□ 2.66
USP47Q96K76 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC31.67■■■□□ 2.66
USP47Q96K76 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC31.67■■■□□ 2.66
USP47Q96K76 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC31.66■■■□□ 2.66
USP47Q96K76 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
USP47Q96K76 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC31.66■■■□□ 2.66
USP47Q96K76 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
USP47Q96K76 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC31.66■■■□□ 2.66
USP47Q96K76 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
USP47Q96K76 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC31.65■■■□□ 2.66
USP47Q96K76 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC31.65■■■□□ 2.66
USP47Q96K76 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
USP47Q96K76 AC144652.1-201ENST00000609974 1624 ntBASIC31.65■■■□□ 2.66
USP47Q96K76 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC31.65■■■□□ 2.66
USP47Q96K76 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC31.65■■■□□ 2.66
USP47Q96K76 ANOS2P-203ENST00000472227 1816 ntBASIC31.65■■■□□ 2.66
USP47Q96K76 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
USP47Q96K76 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
USP47Q96K76 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC31.64■■■□□ 2.66
USP47Q96K76 AC099791.2-201ENST00000605725 427 ntBASIC31.64■■■□□ 2.66
USP47Q96K76 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC31.64■■■□□ 2.66
USP47Q96K76 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC31.63■■■□□ 2.65
USP47Q96K76 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC31.63■■■□□ 2.65
USP47Q96K76 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
USP47Q96K76 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC31.63■■■□□ 2.65
USP47Q96K76 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC31.63■■■□□ 2.65
USP47Q96K76 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
USP47Q96K76 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC31.62■■■□□ 2.65
USP47Q96K76 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC31.62■■■□□ 2.65
USP47Q96K76 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
USP47Q96K76 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC31.62■■■□□ 2.65
USP47Q96K76 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
USP47Q96K76 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC31.62■■■□□ 2.65
USP47Q96K76 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
USP47Q96K76 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC31.61■■■□□ 2.65
USP47Q96K76 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC31.61■■■□□ 2.65
USP47Q96K76 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC31.61■■■□□ 2.65
USP47Q96K76 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
USP47Q96K76 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC31.61■■■□□ 2.65
USP47Q96K76 AC092068.2-201ENST00000590491 1708 ntBASIC31.61■■■□□ 2.65
USP47Q96K76 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC31.61■■■□□ 2.65
USP47Q96K76 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
USP47Q96K76 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC31.6■■■□□ 2.65
USP47Q96K76 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC31.6■■■□□ 2.65
USP47Q96K76 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
USP47Q96K76 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC31.6■■■□□ 2.65
USP47Q96K76 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC31.6■■■□□ 2.65
USP47Q96K76 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
USP47Q96K76 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC31.59■■■□□ 2.65
USP47Q96K76 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
USP47Q96K76 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC31.59■■■□□ 2.65
USP47Q96K76 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC31.59■■■□□ 2.65
USP47Q96K76 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC31.59■■■□□ 2.65
USP47Q96K76 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
USP47Q96K76 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC31.59■■■□□ 2.65
USP47Q96K76 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC31.59■■■□□ 2.65
USP47Q96K76 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
USP47Q96K76 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC31.59■■■□□ 2.65
USP47Q96K76 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC31.59■■■□□ 2.65
USP47Q96K76 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
USP47Q96K76 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
USP47Q96K76 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC31.58■■■□□ 2.65
USP47Q96K76 AC009086.3-201ENST00000623486 1008 ntBASIC31.58■■■□□ 2.65
USP47Q96K76 AC241377.3-202ENST00000626088 1088 ntBASIC31.58■■■□□ 2.65
USP47Q96K76 AC241585.3-202ENST00000628937 1088 ntBASIC31.58■■■□□ 2.65
USP47Q96K76 AC245100.8-202ENST00000629247 1058 ntBASIC31.58■■■□□ 2.65
USP47Q96K76 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC31.58■■■□□ 2.65
USP47Q96K76 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC31.58■■■□□ 2.65
USP47Q96K76 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC31.58■■■□□ 2.65
USP47Q96K76 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC31.58■■■□□ 2.65
USP47Q96K76 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC31.57■■■□□ 2.64
USP47Q96K76 AC110285.6-201ENST00000617652 491 ntBASIC31.57■■■□□ 2.64
USP47Q96K76 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
USP47Q96K76 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC31.57■■■□□ 2.64
USP47Q96K76 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
USP47Q96K76 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC31.57■■■□□ 2.64
USP47Q96K76 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC31.56■■■□□ 2.64
USP47Q96K76 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC31.56■■■□□ 2.64
USP47Q96K76 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
USP47Q96K76 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
USP47Q96K76 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
USP47Q96K76 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC31.56■■■□□ 2.64
USP47Q96K76 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
USP47Q96K76 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC31.56■■■□□ 2.64
USP47Q96K76 GTSE1-AS1-202ENST00000623117 1518 ntBASIC31.55■■■□□ 2.64
USP47Q96K76 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC31.55■■■□□ 2.64
USP47Q96K76 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC31.55■■■□□ 2.64
USP47Q96K76 AC096631.2-201ENST00000436136 790 ntBASIC31.55■■■□□ 2.64
USP47Q96K76 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC31.54■■■□□ 2.64
USP47Q96K76 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
USP47Q96K76 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
USP47Q96K76 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
USP47Q96K76 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC31.54■■■□□ 2.64
USP47Q96K76 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC31.54■■■□□ 2.64
Retrieved 100 of 98,524 protein–RNA pairs in 15.8 ms