Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC29.47■■■□□ 2.31
RTF1Q92541 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC29.47■■■□□ 2.31
RTF1Q92541 pRNA.11-201ENST00000618423 90 ntBASIC29.47■■■□□ 2.31
RTF1Q92541 pRNA.13-201ENST00000619112 90 ntBASIC29.47■■■□□ 2.31
RTF1Q92541 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC29.47■■■□□ 2.31
RTF1Q92541 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC29.46■■■□□ 2.31
RTF1Q92541 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
RTF1Q92541 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC29.46■■■□□ 2.31
RTF1Q92541 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC29.46■■■□□ 2.31
RTF1Q92541 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC29.46■■■□□ 2.31
RTF1Q92541 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC29.46■■■□□ 2.31
RTF1Q92541 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC29.46■■■□□ 2.31
RTF1Q92541 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
RTF1Q92541 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
RTF1Q92541 AC004812.2-201ENST00000611079 2094 ntBASIC29.46■■■□□ 2.31
RTF1Q92541 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
RTF1Q92541 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC29.45■■■□□ 2.31
RTF1Q92541 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC29.45■■■□□ 2.31
RTF1Q92541 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC29.45■■■□□ 2.31
RTF1Q92541 GTSE1-AS1-202ENST00000623117 1518 ntBASIC29.45■■■□□ 2.3
RTF1Q92541 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC29.44■■■□□ 2.3
RTF1Q92541 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
RTF1Q92541 ZNRF2P3-201ENST00000424200 374 ntBASIC29.44■■■□□ 2.3
RTF1Q92541 AC091305.1-201ENST00000479476 895 ntBASIC29.44■■■□□ 2.3
RTF1Q92541 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC29.44■■■□□ 2.3
RTF1Q92541 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
RTF1Q92541 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC29.44■■■□□ 2.3
RTF1Q92541 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
RTF1Q92541 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
RTF1Q92541 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC29.43■■■□□ 2.3
RTF1Q92541 GUK1-205ENST00000366722 850 ntTSL 3 BASIC29.43■■■□□ 2.3
RTF1Q92541 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC29.43■■■□□ 2.3
RTF1Q92541 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC29.43■■■□□ 2.3
RTF1Q92541 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
RTF1Q92541 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC29.43■■■□□ 2.3
RTF1Q92541 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
RTF1Q92541 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC29.43■■■□□ 2.3
RTF1Q92541 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
RTF1Q92541 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC29.43■■■□□ 2.3
RTF1Q92541 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC29.42■■■□□ 2.3
RTF1Q92541 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC29.42■■■□□ 2.3
RTF1Q92541 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
RTF1Q92541 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC29.42■■■□□ 2.3
RTF1Q92541 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
RTF1Q92541 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC29.42■■■□□ 2.3
RTF1Q92541 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC29.42■■■□□ 2.3
RTF1Q92541 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC29.41■■■□□ 2.3
RTF1Q92541 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
RTF1Q92541 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
RTF1Q92541 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
RTF1Q92541 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC29.41■■■□□ 2.3
RTF1Q92541 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC29.41■■■□□ 2.3
RTF1Q92541 MAG-206ENST00000597035 542 ntTSL 4 BASIC29.41■■■□□ 2.3
RTF1Q92541 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
RTF1Q92541 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC29.4■■■□□ 2.3
RTF1Q92541 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC29.4■■■□□ 2.3
RTF1Q92541 AC027682.1-201ENST00000562846 899 ntBASIC29.4■■■□□ 2.3
RTF1Q92541 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC29.4■■■□□ 2.3
RTF1Q92541 AC008764.7-201ENST00000593779 1081 ntBASIC29.4■■■□□ 2.3
RTF1Q92541 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
RTF1Q92541 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC29.4■■■□□ 2.3
RTF1Q92541 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC29.4■■■□□ 2.3
RTF1Q92541 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
RTF1Q92541 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
RTF1Q92541 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC29.4■■■□□ 2.3
RTF1Q92541 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
RTF1Q92541 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC29.39■■■□□ 2.3
RTF1Q92541 AC105265.2-201ENST00000467189 838 ntBASIC29.39■■■□□ 2.3
RTF1Q92541 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC29.39■■■□□ 2.3
RTF1Q92541 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC29.39■■■□□ 2.3
RTF1Q92541 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
RTF1Q92541 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC29.39■■■□□ 2.3
RTF1Q92541 RASA4CP-201ENST00000424092 1398 ntBASIC29.39■■■□□ 2.29
RTF1Q92541 FP325331.1-202ENST00000623531 1380 ntBASIC29.39■■■□□ 2.29
RTF1Q92541 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC29.38■■■□□ 2.29
RTF1Q92541 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
RTF1Q92541 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC29.38■■■□□ 2.29
RTF1Q92541 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
RTF1Q92541 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC29.38■■■□□ 2.29
RTF1Q92541 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
RTF1Q92541 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
RTF1Q92541 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC29.37■■■□□ 2.29
RTF1Q92541 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC29.37■■■□□ 2.29
RTF1Q92541 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
RTF1Q92541 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
RTF1Q92541 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC29.37■■■□□ 2.29
RTF1Q92541 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC29.37■■■□□ 2.29
RTF1Q92541 CA15P2-201ENST00000611168 834 ntBASIC29.37■■■□□ 2.29
RTF1Q92541 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC29.36■■■□□ 2.29
RTF1Q92541 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC29.36■■■□□ 2.29
RTF1Q92541 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
RTF1Q92541 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC29.36■■■□□ 2.29
RTF1Q92541 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
RTF1Q92541 AC144652.1-201ENST00000609974 1624 ntBASIC29.35■■■□□ 2.29
RTF1Q92541 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC29.35■■■□□ 2.29
RTF1Q92541 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
RTF1Q92541 AC099791.1-201ENST00000416440 715 ntBASIC29.35■■■□□ 2.29
RTF1Q92541 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC29.35■■■□□ 2.29
RTF1Q92541 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC29.35■■■□□ 2.29
RTF1Q92541 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
Retrieved 100 of 98,524 protein–RNA pairs in 14.9 ms