Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
LMX1AQ8TE12 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC22.02■■□□□ 1.12
LMX1AQ8TE12 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
LMX1AQ8TE12 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
LMX1AQ8TE12 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC22.01■■□□□ 1.11
LMX1AQ8TE12 SNX3-202ENST00000349379 890 ntTSL 2 BASIC22.01■■□□□ 1.11
LMX1AQ8TE12 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC22.01■■□□□ 1.11
LMX1AQ8TE12 AC097381.1-201ENST00000429019 1296 ntBASIC22.01■■□□□ 1.11
LMX1AQ8TE12 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
LMX1AQ8TE12 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC22.01■■□□□ 1.11
LMX1AQ8TE12 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
LMX1AQ8TE12 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
LMX1AQ8TE12 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC22■■□□□ 1.11
LMX1AQ8TE12 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
LMX1AQ8TE12 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC22■■□□□ 1.11
LMX1AQ8TE12 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
LMX1AQ8TE12 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
LMX1AQ8TE12 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC22■■□□□ 1.11
LMX1AQ8TE12 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
LMX1AQ8TE12 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC22■■□□□ 1.11
LMX1AQ8TE12 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC22■■□□□ 1.11
LMX1AQ8TE12 ANKRD20A6P-201ENST00000618763 204 ntBASIC22■■□□□ 1.11
LMX1AQ8TE12 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC22■■□□□ 1.11
LMX1AQ8TE12 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
LMX1AQ8TE12 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
LMX1AQ8TE12 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC21.99■■□□□ 1.11
LMX1AQ8TE12 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
LMX1AQ8TE12 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
LMX1AQ8TE12 AC104564.3-201ENST00000582367 638 ntBASIC21.99■■□□□ 1.11
LMX1AQ8TE12 AC087623.3-201ENST00000607047 1098 ntBASIC21.99■■□□□ 1.11
LMX1AQ8TE12 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC21.99■■□□□ 1.11
LMX1AQ8TE12 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
LMX1AQ8TE12 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
LMX1AQ8TE12 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
LMX1AQ8TE12 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
LMX1AQ8TE12 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC21.98■■□□□ 1.11
LMX1AQ8TE12 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
LMX1AQ8TE12 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
LMX1AQ8TE12 JTB-203ENST00000368589 1216 ntTSL 2 BASIC21.98■■□□□ 1.11
LMX1AQ8TE12 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC21.98■■□□□ 1.11
LMX1AQ8TE12 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC21.98■■□□□ 1.11
LMX1AQ8TE12 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC21.98■■□□□ 1.11
LMX1AQ8TE12 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC21.98■■□□□ 1.11
LMX1AQ8TE12 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC21.98■■□□□ 1.11
LMX1AQ8TE12 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
LMX1AQ8TE12 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
LMX1AQ8TE12 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
LMX1AQ8TE12 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
LMX1AQ8TE12 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC21.97■■□□□ 1.11
LMX1AQ8TE12 SLC47A1P1-202ENST00000449666 945 ntBASIC21.97■■□□□ 1.11
LMX1AQ8TE12 PLD4-205ENST00000553861 667 ntTSL 2 BASIC21.97■■□□□ 1.11
LMX1AQ8TE12 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.97■■□□□ 1.11
LMX1AQ8TE12 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
LMX1AQ8TE12 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
LMX1AQ8TE12 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
LMX1AQ8TE12 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
LMX1AQ8TE12 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
LMX1AQ8TE12 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
LMX1AQ8TE12 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC21.96■■□□□ 1.11
LMX1AQ8TE12 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
LMX1AQ8TE12 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC21.96■■□□□ 1.11
LMX1AQ8TE12 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
LMX1AQ8TE12 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
LMX1AQ8TE12 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC21.96■■□□□ 1.11
LMX1AQ8TE12 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC21.96■■□□□ 1.11
LMX1AQ8TE12 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
LMX1AQ8TE12 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC21.95■■□□□ 1.1
LMX1AQ8TE12 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC21.95■■□□□ 1.1
LMX1AQ8TE12 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC21.95■■□□□ 1.1
LMX1AQ8TE12 AC133637.1-201ENST00000624115 1537 ntBASIC21.95■■□□□ 1.1
LMX1AQ8TE12 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC21.95■■□□□ 1.1
LMX1AQ8TE12 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
LMX1AQ8TE12 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
LMX1AQ8TE12 EI24-213ENST00000618552 1747 ntTSL 5 BASIC21.94■■□□□ 1.1
LMX1AQ8TE12 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
LMX1AQ8TE12 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC21.94■■□□□ 1.1
LMX1AQ8TE12 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
LMX1AQ8TE12 PARL-206ENST00000435888 1098 ntTSL 5 BASIC21.94■■□□□ 1.1
LMX1AQ8TE12 TSPY26P-201ENST00000476365 1326 ntBASIC21.94■■□□□ 1.1
LMX1AQ8TE12 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC21.94■■□□□ 1.1
LMX1AQ8TE12 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
LMX1AQ8TE12 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC21.94■■□□□ 1.1
LMX1AQ8TE12 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
LMX1AQ8TE12 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
LMX1AQ8TE12 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
LMX1AQ8TE12 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC21.93■■□□□ 1.1
LMX1AQ8TE12 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
LMX1AQ8TE12 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
LMX1AQ8TE12 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC21.93■■□□□ 1.1
LMX1AQ8TE12 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC21.93■■□□□ 1.1
LMX1AQ8TE12 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC21.93■■□□□ 1.1
LMX1AQ8TE12 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
LMX1AQ8TE12 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
LMX1AQ8TE12 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
LMX1AQ8TE12 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
LMX1AQ8TE12 SP2-202ENST00000613139 908 ntTSL 5 BASIC21.92■■□□□ 1.1
LMX1AQ8TE12 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC21.92■■□□□ 1.1
LMX1AQ8TE12 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
LMX1AQ8TE12 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC21.92■■□□□ 1.1
LMX1AQ8TE12 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms