Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
VRK3Q8IV63 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
VRK3Q8IV63 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
VRK3Q8IV63 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
VRK3Q8IV63 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC22.07■■□□□ 1.12
VRK3Q8IV63 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
VRK3Q8IV63 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
VRK3Q8IV63 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
VRK3Q8IV63 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC22.06■■□□□ 1.12
VRK3Q8IV63 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
VRK3Q8IV63 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC22.06■■□□□ 1.12
VRK3Q8IV63 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
VRK3Q8IV63 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC22.06■■□□□ 1.12
VRK3Q8IV63 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC22.06■■□□□ 1.12
VRK3Q8IV63 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
VRK3Q8IV63 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC22.06■■□□□ 1.12
VRK3Q8IV63 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC22.06■■□□□ 1.12
VRK3Q8IV63 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC22.06■■□□□ 1.12
VRK3Q8IV63 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
VRK3Q8IV63 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC22.05■■□□□ 1.12
VRK3Q8IV63 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
VRK3Q8IV63 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC22.05■■□□□ 1.12
VRK3Q8IV63 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
VRK3Q8IV63 QDPR-206ENST00000508623 601 ntTSL 3 BASIC22.05■■□□□ 1.12
VRK3Q8IV63 AL356740.2-201ENST00000601559 647 ntBASIC22.05■■□□□ 1.12
VRK3Q8IV63 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC22.05■■□□□ 1.12
VRK3Q8IV63 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC22.05■■□□□ 1.12
VRK3Q8IV63 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
VRK3Q8IV63 AC092068.2-201ENST00000590491 1708 ntBASIC22.05■■□□□ 1.12
VRK3Q8IV63 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
VRK3Q8IV63 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
VRK3Q8IV63 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
VRK3Q8IV63 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC22.04■■□□□ 1.12
VRK3Q8IV63 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
VRK3Q8IV63 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
VRK3Q8IV63 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC22.04■■□□□ 1.12
VRK3Q8IV63 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
VRK3Q8IV63 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
VRK3Q8IV63 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
VRK3Q8IV63 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC22.04■■□□□ 1.12
VRK3Q8IV63 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC22.04■■□□□ 1.12
VRK3Q8IV63 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
VRK3Q8IV63 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
VRK3Q8IV63 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
VRK3Q8IV63 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
VRK3Q8IV63 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC22.04■■□□□ 1.12
VRK3Q8IV63 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
VRK3Q8IV63 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
VRK3Q8IV63 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC22.03■■□□□ 1.12
VRK3Q8IV63 NFE2L3P1-201ENST00000588207 1959 ntBASIC22.03■■□□□ 1.12
VRK3Q8IV63 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
VRK3Q8IV63 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
VRK3Q8IV63 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC22.03■■□□□ 1.12
VRK3Q8IV63 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC22.03■■□□□ 1.12
VRK3Q8IV63 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC22.03■■□□□ 1.12
VRK3Q8IV63 TRIR-202ENST00000588213 841 ntTSL 3 BASIC22.03■■□□□ 1.12
VRK3Q8IV63 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC22.03■■□□□ 1.12
VRK3Q8IV63 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
VRK3Q8IV63 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC22.02■■□□□ 1.12
VRK3Q8IV63 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
VRK3Q8IV63 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.12
VRK3Q8IV63 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
VRK3Q8IV63 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
VRK3Q8IV63 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
VRK3Q8IV63 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC22.02■■□□□ 1.12
VRK3Q8IV63 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC22.02■■□□□ 1.12
VRK3Q8IV63 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC22.02■■□□□ 1.12
VRK3Q8IV63 SRR-208ENST00000576848 588 ntTSL 4 BASIC22.02■■□□□ 1.12
VRK3Q8IV63 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC22.02■■□□□ 1.12
VRK3Q8IV63 AL512631.2-201ENST00000604634 923 ntBASIC22.02■■□□□ 1.12
VRK3Q8IV63 NKILA-201ENST00000613231 537 ntTSL 4 BASIC22.02■■□□□ 1.12
VRK3Q8IV63 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
VRK3Q8IV63 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC22.02■■□□□ 1.12
VRK3Q8IV63 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC22.02■■□□□ 1.12
VRK3Q8IV63 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.11
VRK3Q8IV63 DUSP8P5-201ENST00000422884 1815 ntBASIC22.01■■□□□ 1.11
VRK3Q8IV63 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC22.01■■□□□ 1.11
VRK3Q8IV63 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
VRK3Q8IV63 ASB1-202ENST00000409297 878 ntTSL 5 BASIC22.01■■□□□ 1.11
VRK3Q8IV63 AC131212.1-201ENST00000613771 668 ntBASIC22.01■■□□□ 1.11
VRK3Q8IV63 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC22.01■■□□□ 1.11
VRK3Q8IV63 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
VRK3Q8IV63 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
VRK3Q8IV63 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
VRK3Q8IV63 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC22■■□□□ 1.11
VRK3Q8IV63 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC22■■□□□ 1.11
VRK3Q8IV63 RPP21-222ENST00000433076 577 ntTSL 2 BASIC22■■□□□ 1.11
VRK3Q8IV63 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
VRK3Q8IV63 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC22■■□□□ 1.11
VRK3Q8IV63 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC22■■□□□ 1.11
VRK3Q8IV63 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC22■■□□□ 1.11
VRK3Q8IV63 C17orf82-201ENST00000623772 1530 ntBASIC22■■□□□ 1.11
VRK3Q8IV63 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC21.99■■□□□ 1.11
VRK3Q8IV63 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
VRK3Q8IV63 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
VRK3Q8IV63 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC21.99■■□□□ 1.11
VRK3Q8IV63 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
VRK3Q8IV63 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC21.99■■□□□ 1.11
VRK3Q8IV63 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC21.99■■□□□ 1.11
VRK3Q8IV63 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 13.3 ms