Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 HACD1-201ENST00000326961 773 ntTSL 2 BASIC19.32■□□□□ 0.68
USF3Q68DE3 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC19.32■□□□□ 0.68
USF3Q68DE3 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USF3Q68DE3 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC19.32■□□□□ 0.68
USF3Q68DE3 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USF3Q68DE3 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC19.31■□□□□ 0.68
USF3Q68DE3 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC19.31■□□□□ 0.68
USF3Q68DE3 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
USF3Q68DE3 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC19.31■□□□□ 0.68
USF3Q68DE3 AL139125.2-201ENST00000623134 1869 ntBASIC19.31■□□□□ 0.68
USF3Q68DE3 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USF3Q68DE3 NKILA-201ENST00000613231 537 ntTSL 4 BASIC19.31■□□□□ 0.68
USF3Q68DE3 LINC00543-201ENST00000567234 1845 ntBASIC19.3■□□□□ 0.68
USF3Q68DE3 CD37-213ENST00000598095 1598 ntTSL 2 BASIC19.3■□□□□ 0.68
USF3Q68DE3 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
USF3Q68DE3 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC19.3■□□□□ 0.68
USF3Q68DE3 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC19.3■□□□□ 0.68
USF3Q68DE3 AC099791.1-201ENST00000416440 715 ntBASIC19.3■□□□□ 0.68
USF3Q68DE3 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC19.3■□□□□ 0.68
USF3Q68DE3 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USF3Q68DE3 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USF3Q68DE3 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC19.29■□□□□ 0.68
USF3Q68DE3 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
USF3Q68DE3 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
USF3Q68DE3 LINC01124-201ENST00000409786 2117 ntBASIC19.29■□□□□ 0.68
USF3Q68DE3 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USF3Q68DE3 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USF3Q68DE3 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USF3Q68DE3 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC19.29■□□□□ 0.68
USF3Q68DE3 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
USF3Q68DE3 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
USF3Q68DE3 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
USF3Q68DE3 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
USF3Q68DE3 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC19.29■□□□□ 0.68
USF3Q68DE3 TMEM202-AS1-202ENST00000565181 2325 ntBASIC19.29■□□□□ 0.68
USF3Q68DE3 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC19.29■□□□□ 0.68
USF3Q68DE3 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USF3Q68DE3 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC19.28■□□□□ 0.68
USF3Q68DE3 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC19.28■□□□□ 0.68
USF3Q68DE3 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC19.28■□□□□ 0.68
USF3Q68DE3 AC092171.4-201ENST00000609130 632 ntBASIC19.28■□□□□ 0.68
USF3Q68DE3 AC241377.3-202ENST00000626088 1088 ntBASIC19.28■□□□□ 0.68
USF3Q68DE3 AC241585.3-202ENST00000628937 1088 ntBASIC19.28■□□□□ 0.68
USF3Q68DE3 AC245100.8-202ENST00000629247 1058 ntBASIC19.28■□□□□ 0.68
USF3Q68DE3 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC19.28■□□□□ 0.68
USF3Q68DE3 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USF3Q68DE3 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
USF3Q68DE3 LSR-205ENST00000427250 1606 ntTSL 2 BASIC19.28■□□□□ 0.68
USF3Q68DE3 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC19.28■□□□□ 0.68
USF3Q68DE3 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
USF3Q68DE3 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC19.27■□□□□ 0.68
USF3Q68DE3 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
USF3Q68DE3 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
USF3Q68DE3 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
USF3Q68DE3 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
USF3Q68DE3 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
USF3Q68DE3 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
USF3Q68DE3 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
USF3Q68DE3 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
USF3Q68DE3 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
USF3Q68DE3 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
USF3Q68DE3 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
USF3Q68DE3 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC19.27■□□□□ 0.67
USF3Q68DE3 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
USF3Q68DE3 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC19.26■□□□□ 0.67
USF3Q68DE3 AP003733.4-201ENST00000623785 1697 ntBASIC19.26■□□□□ 0.67
USF3Q68DE3 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
USF3Q68DE3 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
USF3Q68DE3 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USF3Q68DE3 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
USF3Q68DE3 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC19.26■□□□□ 0.67
USF3Q68DE3 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
USF3Q68DE3 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC19.26■□□□□ 0.67
USF3Q68DE3 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USF3Q68DE3 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC19.26■□□□□ 0.67
USF3Q68DE3 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
USF3Q68DE3 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC19.26■□□□□ 0.67
USF3Q68DE3 USF2-207ENST00000595068 1612 ntTSL 5 BASIC19.26■□□□□ 0.67
USF3Q68DE3 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
USF3Q68DE3 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USF3Q68DE3 SNX3-202ENST00000349379 890 ntTSL 2 BASIC19.25■□□□□ 0.67
USF3Q68DE3 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC19.25■□□□□ 0.67
USF3Q68DE3 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC19.25■□□□□ 0.67
USF3Q68DE3 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
USF3Q68DE3 HES6-206ENST00000409574 738 ntTSL 2 BASIC19.25■□□□□ 0.67
USF3Q68DE3 AC233992.3-201ENST00000607491 485 ntBASIC19.25■□□□□ 0.67
USF3Q68DE3 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USF3Q68DE3 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC19.25■□□□□ 0.67
USF3Q68DE3 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC19.25■□□□□ 0.67
USF3Q68DE3 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USF3Q68DE3 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
USF3Q68DE3 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
USF3Q68DE3 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
USF3Q68DE3 BX842568.3-201ENST00000418104 571 ntBASIC19.24■□□□□ 0.67
USF3Q68DE3 PARL-206ENST00000435888 1098 ntTSL 5 BASIC19.24■□□□□ 0.67
USF3Q68DE3 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC19.24■□□□□ 0.67
USF3Q68DE3 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC19.24■□□□□ 0.67
USF3Q68DE3 MIR6089-201ENST00000616698 64 ntBASIC19.24■□□□□ 0.67
USF3Q68DE3 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USF3Q68DE3 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms