Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PRKNO60260 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PRKNO60260 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PRKNO60260 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC20.94■□□□□ 0.94
PRKNO60260 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PRKNO60260 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
PRKNO60260 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PRKNO60260 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PRKNO60260 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC20.94■□□□□ 0.94
PRKNO60260 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
PRKNO60260 C17orf82-201ENST00000623772 1530 ntBASIC20.94■□□□□ 0.94
PRKNO60260 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
PRKNO60260 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PRKNO60260 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC20.93■□□□□ 0.94
PRKNO60260 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC20.93■□□□□ 0.94
PRKNO60260 NALT1-201ENST00000429224 738 ntTSL 5 BASIC20.93■□□□□ 0.94
PRKNO60260 AC096631.2-201ENST00000436136 790 ntBASIC20.93■□□□□ 0.94
PRKNO60260 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC20.93■□□□□ 0.94
PRKNO60260 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC20.93■□□□□ 0.94
PRKNO60260 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PRKNO60260 NKILA-201ENST00000613231 537 ntTSL 4 BASIC20.93■□□□□ 0.94
PRKNO60260 AC110285.6-201ENST00000617652 491 ntBASIC20.93■□□□□ 0.94
PRKNO60260 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.93■□□□□ 0.94
PRKNO60260 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
PRKNO60260 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PRKNO60260 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PRKNO60260 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
PRKNO60260 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
PRKNO60260 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PRKNO60260 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PRKNO60260 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
PRKNO60260 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
PRKNO60260 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PRKNO60260 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
PRKNO60260 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PRKNO60260 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PRKNO60260 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
PRKNO60260 CASK-201ENST00000378154 2494 ntTSL 5 BASIC20.92■□□□□ 0.94
PRKNO60260 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PRKNO60260 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
PRKNO60260 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
PRKNO60260 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PRKNO60260 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.91■□□□□ 0.94
PRKNO60260 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PRKNO60260 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
PRKNO60260 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
PRKNO60260 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
PRKNO60260 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
PRKNO60260 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC20.91■□□□□ 0.94
PRKNO60260 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
PRKNO60260 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC20.9■□□□□ 0.94
PRKNO60260 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC20.9■□□□□ 0.94
PRKNO60260 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
PRKNO60260 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PRKNO60260 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
PRKNO60260 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.9■□□□□ 0.94
PRKNO60260 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.9■□□□□ 0.94
PRKNO60260 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
PRKNO60260 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PRKNO60260 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
PRKNO60260 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
PRKNO60260 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
PRKNO60260 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PRKNO60260 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PRKNO60260 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PRKNO60260 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PRKNO60260 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.89■□□□□ 0.93
PRKNO60260 AC099791.2-201ENST00000605725 427 ntBASIC20.89■□□□□ 0.93
PRKNO60260 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
PRKNO60260 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
PRKNO60260 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
PRKNO60260 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC20.89■□□□□ 0.93
PRKNO60260 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
PRKNO60260 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PRKNO60260 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
PRKNO60260 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC20.88■□□□□ 0.93
PRKNO60260 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PRKNO60260 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC20.88■□□□□ 0.93
PRKNO60260 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PRKNO60260 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
PRKNO60260 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PRKNO60260 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC20.88■□□□□ 0.93
PRKNO60260 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.88■□□□□ 0.93
PRKNO60260 AL139246.5-201ENST00000606645 996 ntBASIC20.88■□□□□ 0.93
PRKNO60260 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PRKNO60260 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PRKNO60260 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PRKNO60260 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
PRKNO60260 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
PRKNO60260 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PRKNO60260 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
PRKNO60260 UNC93B3-201ENST00000308076 687 ntBASIC20.86■□□□□ 0.93
PRKNO60260 AC006455.2-201ENST00000429931 906 ntBASIC20.86■□□□□ 0.93
PRKNO60260 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC20.86■□□□□ 0.93
PRKNO60260 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PRKNO60260 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
PRKNO60260 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PRKNO60260 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
PRKNO60260 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
PRKNO60260 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms