Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
SLC28A1O00337 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
SLC28A1O00337 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
SLC28A1O00337 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SLC28A1O00337 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC21.65■■□□□ 1.06
SLC28A1O00337 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
SLC28A1O00337 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SLC28A1O00337 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SLC28A1O00337 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SLC28A1O00337 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SLC28A1O00337 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SLC28A1O00337 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC21.65■■□□□ 1.06
SLC28A1O00337 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SLC28A1O00337 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SLC28A1O00337 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
SLC28A1O00337 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
SLC28A1O00337 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SLC28A1O00337 AC103834.1-201ENST00000520383 144 ntBASIC21.64■■□□□ 1.05
SLC28A1O00337 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.64■■□□□ 1.05
SLC28A1O00337 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SLC28A1O00337 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SLC28A1O00337 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
SLC28A1O00337 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC21.64■■□□□ 1.05
SLC28A1O00337 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC21.64■■□□□ 1.05
SLC28A1O00337 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
SLC28A1O00337 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
SLC28A1O00337 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.63■■□□□ 1.05
SLC28A1O00337 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SLC28A1O00337 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SLC28A1O00337 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SLC28A1O00337 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SLC28A1O00337 YBX1P4-201ENST00000392794 808 ntBASIC21.63■■□□□ 1.05
SLC28A1O00337 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SLC28A1O00337 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SLC28A1O00337 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
SLC28A1O00337 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
SLC28A1O00337 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SLC28A1O00337 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
SLC28A1O00337 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
SLC28A1O00337 USF2-207ENST00000595068 1612 ntTSL 5 BASIC21.62■■□□□ 1.05
SLC28A1O00337 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.62■■□□□ 1.05
SLC28A1O00337 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SLC28A1O00337 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SLC28A1O00337 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SLC28A1O00337 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC21.62■■□□□ 1.05
SLC28A1O00337 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
SLC28A1O00337 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SLC28A1O00337 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
SLC28A1O00337 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.62■■□□□ 1.05
SLC28A1O00337 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SLC28A1O00337 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SLC28A1O00337 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SLC28A1O00337 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SLC28A1O00337 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SLC28A1O00337 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SLC28A1O00337 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
SLC28A1O00337 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SLC28A1O00337 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SLC28A1O00337 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SLC28A1O00337 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SLC28A1O00337 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
SLC28A1O00337 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
SLC28A1O00337 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC21.6■■□□□ 1.05
SLC28A1O00337 AC103724.3-201ENST00000564481 992 ntBASIC21.6■■□□□ 1.05
SLC28A1O00337 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SLC28A1O00337 SNX5-217ENST00000606557 1087 ntBASIC21.6■■□□□ 1.05
SLC28A1O00337 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SLC28A1O00337 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
SLC28A1O00337 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SLC28A1O00337 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
SLC28A1O00337 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SLC28A1O00337 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
SLC28A1O00337 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SLC28A1O00337 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.59■■□□□ 1.05
SLC28A1O00337 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC21.59■■□□□ 1.05
SLC28A1O00337 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.59■■□□□ 1.05
SLC28A1O00337 KRT8P33-201ENST00000508125 1423 ntBASIC21.59■■□□□ 1.05
SLC28A1O00337 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SLC28A1O00337 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
SLC28A1O00337 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.59■■□□□ 1.05
SLC28A1O00337 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.59■■□□□ 1.05
SLC28A1O00337 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SLC28A1O00337 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SLC28A1O00337 TK2-216ENST00000564917 1156 ntTSL 3 BASIC21.58■■□□□ 1.05
SLC28A1O00337 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
SLC28A1O00337 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC21.58■■□□□ 1.05
SLC28A1O00337 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
SLC28A1O00337 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.04
SLC28A1O00337 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
SLC28A1O00337 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
SLC28A1O00337 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
SLC28A1O00337 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
SLC28A1O00337 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SLC28A1O00337 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SLC28A1O00337 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC21.57■■□□□ 1.04
SLC28A1O00337 AC137630.3-201ENST00000607245 391 ntBASIC21.57■■□□□ 1.04
SLC28A1O00337 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SLC28A1O00337 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
SLC28A1O00337 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SLC28A1O00337 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC21.56■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms