Protein–RNA interactions for Protein: A0A0C4DH59

TRBV5-4, T-cell receptor beta variable 5-4 (Fragment), humanhuman

Predictions only

Length 114 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRBV5-4A0A0C4DH59 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC22.28■■□□□ 1.16
TRBV5-4A0A0C4DH59 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
TRBV5-4A0A0C4DH59 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC22.28■■□□□ 1.16
TRBV5-4A0A0C4DH59 AC144652.1-201ENST00000609974 1624 ntBASIC22.28■■□□□ 1.16
TRBV5-4A0A0C4DH59 DUSP8P3-201ENST00000399571 1760 ntBASIC22.27■■□□□ 1.16
TRBV5-4A0A0C4DH59 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.16
TRBV5-4A0A0C4DH59 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC22.27■■□□□ 1.16
TRBV5-4A0A0C4DH59 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC22.27■■□□□ 1.16
TRBV5-4A0A0C4DH59 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
TRBV5-4A0A0C4DH59 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC22.27■■□□□ 1.16
TRBV5-4A0A0C4DH59 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
TRBV5-4A0A0C4DH59 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
TRBV5-4A0A0C4DH59 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
TRBV5-4A0A0C4DH59 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.15
TRBV5-4A0A0C4DH59 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC22.27■■□□□ 1.15
TRBV5-4A0A0C4DH59 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
TRBV5-4A0A0C4DH59 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
TRBV5-4A0A0C4DH59 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
TRBV5-4A0A0C4DH59 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
TRBV5-4A0A0C4DH59 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
TRBV5-4A0A0C4DH59 QDPR-206ENST00000508623 601 ntTSL 3 BASIC22.26■■□□□ 1.15
TRBV5-4A0A0C4DH59 AL512631.2-201ENST00000604634 923 ntBASIC22.26■■□□□ 1.15
TRBV5-4A0A0C4DH59 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC22.26■■□□□ 1.15
TRBV5-4A0A0C4DH59 RASSF1-AS1-201ENST00000629828 790 ntBASIC22.26■■□□□ 1.15
TRBV5-4A0A0C4DH59 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
TRBV5-4A0A0C4DH59 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
TRBV5-4A0A0C4DH59 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
TRBV5-4A0A0C4DH59 ASB1-202ENST00000409297 878 ntTSL 5 BASIC22.25■■□□□ 1.15
TRBV5-4A0A0C4DH59 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
TRBV5-4A0A0C4DH59 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
TRBV5-4A0A0C4DH59 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
TRBV5-4A0A0C4DH59 CASK-201ENST00000378154 2494 ntTSL 5 BASIC22.25■■□□□ 1.15
TRBV5-4A0A0C4DH59 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC22.24■■□□□ 1.15
TRBV5-4A0A0C4DH59 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
TRBV5-4A0A0C4DH59 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
TRBV5-4A0A0C4DH59 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC22.24■■□□□ 1.15
TRBV5-4A0A0C4DH59 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC22.24■■□□□ 1.15
TRBV5-4A0A0C4DH59 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC22.24■■□□□ 1.15
TRBV5-4A0A0C4DH59 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
TRBV5-4A0A0C4DH59 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
TRBV5-4A0A0C4DH59 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC22.24■■□□□ 1.15
TRBV5-4A0A0C4DH59 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
TRBV5-4A0A0C4DH59 NKILA-201ENST00000613231 537 ntTSL 4 BASIC22.24■■□□□ 1.15
TRBV5-4A0A0C4DH59 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC22.24■■□□□ 1.15
TRBV5-4A0A0C4DH59 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC22.24■■□□□ 1.15
TRBV5-4A0A0C4DH59 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC22.24■■□□□ 1.15
TRBV5-4A0A0C4DH59 FP325331.1-202ENST00000623531 1380 ntBASIC22.24■■□□□ 1.15
TRBV5-4A0A0C4DH59 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
TRBV5-4A0A0C4DH59 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
TRBV5-4A0A0C4DH59 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
TRBV5-4A0A0C4DH59 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC22.23■■□□□ 1.15
TRBV5-4A0A0C4DH59 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC22.23■■□□□ 1.15
TRBV5-4A0A0C4DH59 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
TRBV5-4A0A0C4DH59 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC22.22■■□□□ 1.15
TRBV5-4A0A0C4DH59 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC22.22■■□□□ 1.15
TRBV5-4A0A0C4DH59 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC22.22■■□□□ 1.15
TRBV5-4A0A0C4DH59 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
TRBV5-4A0A0C4DH59 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
TRBV5-4A0A0C4DH59 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC22.22■■□□□ 1.15
TRBV5-4A0A0C4DH59 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
TRBV5-4A0A0C4DH59 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
TRBV5-4A0A0C4DH59 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
TRBV5-4A0A0C4DH59 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
TRBV5-4A0A0C4DH59 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
TRBV5-4A0A0C4DH59 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
TRBV5-4A0A0C4DH59 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC22.21■■□□□ 1.15
TRBV5-4A0A0C4DH59 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
TRBV5-4A0A0C4DH59 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
TRBV5-4A0A0C4DH59 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
TRBV5-4A0A0C4DH59 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
TRBV5-4A0A0C4DH59 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
TRBV5-4A0A0C4DH59 RPP21-222ENST00000433076 577 ntTSL 2 BASIC22.21■■□□□ 1.15
TRBV5-4A0A0C4DH59 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC22.21■■□□□ 1.15
TRBV5-4A0A0C4DH59 SRR-208ENST00000576848 588 ntTSL 4 BASIC22.21■■□□□ 1.15
TRBV5-4A0A0C4DH59 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
TRBV5-4A0A0C4DH59 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
TRBV5-4A0A0C4DH59 VGF-203ENST00000611537 1622 ntTSL 5 BASIC22.2■■□□□ 1.15
TRBV5-4A0A0C4DH59 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC22.2■■□□□ 1.15
TRBV5-4A0A0C4DH59 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
TRBV5-4A0A0C4DH59 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
TRBV5-4A0A0C4DH59 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC22.2■■□□□ 1.14
TRBV5-4A0A0C4DH59 AL353803.4-201ENST00000565882 1934 ntBASIC22.2■■□□□ 1.14
TRBV5-4A0A0C4DH59 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC22.2■■□□□ 1.14
TRBV5-4A0A0C4DH59 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC22.2■■□□□ 1.14
TRBV5-4A0A0C4DH59 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
TRBV5-4A0A0C4DH59 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
TRBV5-4A0A0C4DH59 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC22.2■■□□□ 1.14
TRBV5-4A0A0C4DH59 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC22.2■■□□□ 1.14
TRBV5-4A0A0C4DH59 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
TRBV5-4A0A0C4DH59 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.14
TRBV5-4A0A0C4DH59 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
TRBV5-4A0A0C4DH59 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC22.2■■□□□ 1.14
TRBV5-4A0A0C4DH59 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
TRBV5-4A0A0C4DH59 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
TRBV5-4A0A0C4DH59 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
TRBV5-4A0A0C4DH59 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
TRBV5-4A0A0C4DH59 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
TRBV5-4A0A0C4DH59 DUX4L4-201ENST00000566884 1269 ntBASIC22.19■■□□□ 1.14
TRBV5-4A0A0C4DH59 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
TRBV5-4A0A0C4DH59 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC22.19■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms