Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV41A0A0B4J266 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV41A0A0B4J266 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV41A0A0B4J266 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV41A0A0B4J266 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV41A0A0B4J266 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV41A0A0B4J266 AC008406.3-201ENST00000620001 1374 ntBASIC17.69■□□□□ 0.42
TRAV41A0A0B4J266 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV41A0A0B4J266 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC17.69■□□□□ 0.42
TRAV41A0A0B4J266 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV41A0A0B4J266 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV41A0A0B4J266 QDPR-206ENST00000508623 601 ntTSL 3 BASIC17.69■□□□□ 0.42
TRAV41A0A0B4J266 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC17.69■□□□□ 0.42
TRAV41A0A0B4J266 AL512631.2-201ENST00000604634 923 ntBASIC17.69■□□□□ 0.42
TRAV41A0A0B4J266 RASSF1-AS1-201ENST00000629828 790 ntBASIC17.69■□□□□ 0.42
TRAV41A0A0B4J266 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC17.69■□□□□ 0.42
TRAV41A0A0B4J266 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV41A0A0B4J266 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV41A0A0B4J266 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV41A0A0B4J266 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV41A0A0B4J266 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV41A0A0B4J266 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV41A0A0B4J266 SRD5A1P1-201ENST00000442297 786 ntBASIC17.68■□□□□ 0.42
TRAV41A0A0B4J266 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV41A0A0B4J266 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV41A0A0B4J266 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
TRAV41A0A0B4J266 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV41A0A0B4J266 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV41A0A0B4J266 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV41A0A0B4J266 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
TRAV41A0A0B4J266 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC17.67■□□□□ 0.42
TRAV41A0A0B4J266 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC17.67■□□□□ 0.42
TRAV41A0A0B4J266 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV41A0A0B4J266 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV41A0A0B4J266 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV41A0A0B4J266 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV41A0A0B4J266 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC17.67■□□□□ 0.42
TRAV41A0A0B4J266 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC17.67■□□□□ 0.42
TRAV41A0A0B4J266 NKILA-201ENST00000613231 537 ntTSL 4 BASIC17.67■□□□□ 0.42
TRAV41A0A0B4J266 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC17.67■□□□□ 0.42
TRAV41A0A0B4J266 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV41A0A0B4J266 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
TRAV41A0A0B4J266 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV41A0A0B4J266 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
TRAV41A0A0B4J266 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV41A0A0B4J266 C17orf82-201ENST00000623772 1530 ntBASIC17.67■□□□□ 0.42
TRAV41A0A0B4J266 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV41A0A0B4J266 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC17.67■□□□□ 0.42
TRAV41A0A0B4J266 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV41A0A0B4J266 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV41A0A0B4J266 AL136116.3-201ENST00000402907 1138 ntBASIC17.66■□□□□ 0.42
TRAV41A0A0B4J266 MIR4466-201ENST00000606121 54 ntBASIC17.66■□□□□ 0.42
TRAV41A0A0B4J266 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV41A0A0B4J266 GATM-206ENST00000558336 1522 ntTSL 2 BASIC17.66■□□□□ 0.42
TRAV41A0A0B4J266 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV41A0A0B4J266 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC17.66■□□□□ 0.42
TRAV41A0A0B4J266 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRAV41A0A0B4J266 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRAV41A0A0B4J266 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
TRAV41A0A0B4J266 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRAV41A0A0B4J266 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC17.65■□□□□ 0.42
TRAV41A0A0B4J266 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
TRAV41A0A0B4J266 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC17.65■□□□□ 0.42
TRAV41A0A0B4J266 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
TRAV41A0A0B4J266 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
TRAV41A0A0B4J266 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC17.65■□□□□ 0.42
TRAV41A0A0B4J266 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TRAV41A0A0B4J266 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
TRAV41A0A0B4J266 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
TRAV41A0A0B4J266 PKM-204ENST00000449901 2526 ntTSL 2 BASIC17.64■□□□□ 0.41
TRAV41A0A0B4J266 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC17.64■□□□□ 0.41
TRAV41A0A0B4J266 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRAV41A0A0B4J266 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
TRAV41A0A0B4J266 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRAV41A0A0B4J266 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRAV41A0A0B4J266 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
TRAV41A0A0B4J266 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC17.64■□□□□ 0.41
TRAV41A0A0B4J266 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRAV41A0A0B4J266 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TRAV41A0A0B4J266 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC17.64■□□□□ 0.41
TRAV41A0A0B4J266 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV41A0A0B4J266 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV41A0A0B4J266 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC17.63■□□□□ 0.41
TRAV41A0A0B4J266 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV41A0A0B4J266 AC144652.1-201ENST00000609974 1624 ntBASIC17.63■□□□□ 0.41
TRAV41A0A0B4J266 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV41A0A0B4J266 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV41A0A0B4J266 AC241377.3-202ENST00000626088 1088 ntBASIC17.63■□□□□ 0.41
TRAV41A0A0B4J266 AC241585.3-202ENST00000628937 1088 ntBASIC17.63■□□□□ 0.41
TRAV41A0A0B4J266 AC245100.8-202ENST00000629247 1058 ntBASIC17.63■□□□□ 0.41
TRAV41A0A0B4J266 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC17.63■□□□□ 0.41
TRAV41A0A0B4J266 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
TRAV41A0A0B4J266 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
TRAV41A0A0B4J266 ANOS2P-203ENST00000472227 1816 ntBASIC17.63■□□□□ 0.41
TRAV41A0A0B4J266 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC17.63■□□□□ 0.41
TRAV41A0A0B4J266 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TRAV41A0A0B4J266 AC092171.4-201ENST00000609130 632 ntBASIC17.62■□□□□ 0.41
TRAV41A0A0B4J266 AC079630.1-202ENST00000618127 1840 ntBASIC17.62■□□□□ 0.41
TRAV41A0A0B4J266 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRAV41A0A0B4J266 FP325331.1-202ENST00000623531 1380 ntBASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms