Protein–RNA interactions for Protein: A0A087WT01

TRAV27, T-cell receptor alpha variable 27 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV27A0A087WT01 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRAV27A0A087WT01 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRAV27A0A087WT01 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRAV27A0A087WT01 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRAV27A0A087WT01 AC079630.1-202ENST00000618127 1840 ntBASIC20.37■□□□□ 0.85
TRAV27A0A087WT01 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC20.37■□□□□ 0.85
TRAV27A0A087WT01 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC20.37■□□□□ 0.85
TRAV27A0A087WT01 AL117328.2-201ENST00000624617 1940 ntBASIC20.37■□□□□ 0.85
TRAV27A0A087WT01 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRAV27A0A087WT01 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRAV27A0A087WT01 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC20.36■□□□□ 0.85
TRAV27A0A087WT01 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
TRAV27A0A087WT01 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRAV27A0A087WT01 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRAV27A0A087WT01 AC103724.3-201ENST00000564481 992 ntBASIC20.36■□□□□ 0.85
TRAV27A0A087WT01 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC20.36■□□□□ 0.85
TRAV27A0A087WT01 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC20.36■□□□□ 0.85
TRAV27A0A087WT01 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC20.36■□□□□ 0.85
TRAV27A0A087WT01 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRAV27A0A087WT01 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.36■□□□□ 0.85
TRAV27A0A087WT01 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC20.36■□□□□ 0.85
TRAV27A0A087WT01 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC20.36■□□□□ 0.85
TRAV27A0A087WT01 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRAV27A0A087WT01 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
TRAV27A0A087WT01 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRAV27A0A087WT01 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRAV27A0A087WT01 USF2-207ENST00000595068 1612 ntTSL 5 BASIC20.35■□□□□ 0.85
TRAV27A0A087WT01 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
TRAV27A0A087WT01 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRAV27A0A087WT01 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRAV27A0A087WT01 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRAV27A0A087WT01 YBX1P4-201ENST00000392794 808 ntBASIC20.35■□□□□ 0.85
TRAV27A0A087WT01 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TRAV27A0A087WT01 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
TRAV27A0A087WT01 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TRAV27A0A087WT01 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
TRAV27A0A087WT01 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
TRAV27A0A087WT01 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.35■□□□□ 0.85
TRAV27A0A087WT01 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC20.35■□□□□ 0.85
TRAV27A0A087WT01 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRAV27A0A087WT01 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRAV27A0A087WT01 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRAV27A0A087WT01 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.34■□□□□ 0.85
TRAV27A0A087WT01 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRAV27A0A087WT01 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
TRAV27A0A087WT01 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC20.34■□□□□ 0.85
TRAV27A0A087WT01 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
TRAV27A0A087WT01 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.34■□□□□ 0.85
TRAV27A0A087WT01 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.34■□□□□ 0.85
TRAV27A0A087WT01 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
TRAV27A0A087WT01 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRAV27A0A087WT01 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRAV27A0A087WT01 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRAV27A0A087WT01 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
TRAV27A0A087WT01 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
TRAV27A0A087WT01 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
TRAV27A0A087WT01 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
TRAV27A0A087WT01 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
TRAV27A0A087WT01 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
TRAV27A0A087WT01 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
TRAV27A0A087WT01 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
TRAV27A0A087WT01 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
TRAV27A0A087WT01 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
TRAV27A0A087WT01 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC20.33■□□□□ 0.84
TRAV27A0A087WT01 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.33■□□□□ 0.84
TRAV27A0A087WT01 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
TRAV27A0A087WT01 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
TRAV27A0A087WT01 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
TRAV27A0A087WT01 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRAV27A0A087WT01 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
TRAV27A0A087WT01 LSM7-203ENST00000585409 512 ntTSL 2 BASIC20.32■□□□□ 0.84
TRAV27A0A087WT01 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRAV27A0A087WT01 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
TRAV27A0A087WT01 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC20.32■□□□□ 0.84
TRAV27A0A087WT01 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRAV27A0A087WT01 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRAV27A0A087WT01 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRAV27A0A087WT01 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
TRAV27A0A087WT01 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC20.31■□□□□ 0.84
TRAV27A0A087WT01 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
TRAV27A0A087WT01 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
TRAV27A0A087WT01 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TRAV27A0A087WT01 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC20.3■□□□□ 0.84
TRAV27A0A087WT01 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC20.3■□□□□ 0.84
TRAV27A0A087WT01 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC20.3■□□□□ 0.84
TRAV27A0A087WT01 SNX5-217ENST00000606557 1087 ntBASIC20.3■□□□□ 0.84
TRAV27A0A087WT01 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC20.3■□□□□ 0.84
TRAV27A0A087WT01 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TRAV27A0A087WT01 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
TRAV27A0A087WT01 EP400NL-214ENST00000641289 2402 ntBASIC20.29■□□□□ 0.84
TRAV27A0A087WT01 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC20.29■□□□□ 0.84
TRAV27A0A087WT01 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRAV27A0A087WT01 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
TRAV27A0A087WT01 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC20.29■□□□□ 0.84
TRAV27A0A087WT01 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRAV27A0A087WT01 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC20.29■□□□□ 0.84
TRAV27A0A087WT01 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
TRAV27A0A087WT01 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRAV27A0A087WT01 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
TRAV27A0A087WT01 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms