Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 AC244452.3-201ENST00000636814 210 ntBASIC14.81□□□□□ -0.04
HDAC4P56524 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC14.81□□□□□ -0.04
HDAC4P56524 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC4P56524 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
HDAC4P56524 AC020907.1-201ENST00000616460 1350 ntBASIC14.81□□□□□ -0.04
HDAC4P56524 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC14.81□□□□□ -0.04
HDAC4P56524 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
HDAC4P56524 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC4P56524 CYP4F3-201ENST00000221307 5050 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC4P56524 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC4P56524 RCC2P1-201ENST00000452257 1476 ntBASIC14.81□□□□□ -0.04
HDAC4P56524 AC138028.6-201ENST00000616106 1482 ntBASIC14.81□□□□□ -0.04
HDAC4P56524 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC4P56524 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC4P56524 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC4P56524 DLGAP4-202ENST00000340491 2392 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC4P56524 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC14.81□□□□□ -0.04
HDAC4P56524 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC4P56524 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC4P56524 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
HDAC4P56524 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC4P56524 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC4P56524 DLX3-201ENST00000434704 2602 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC4P56524 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC4P56524 TNNI1-201ENST00000336092 1750 ntAPPRIS P2 TSL 5 BASIC14.8□□□□□ -0.04
HDAC4P56524 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC4P56524 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC4P56524 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC4P56524 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC4P56524 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC4P56524 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC14.8□□□□□ -0.04
HDAC4P56524 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC14.8□□□□□ -0.04
HDAC4P56524 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC4P56524 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC14.8□□□□□ -0.04
HDAC4P56524 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC14.8□□□□□ -0.04
HDAC4P56524 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC4P56524 AC239868.1-201ENST00000369385 493 ntBASIC14.8□□□□□ -0.04
HDAC4P56524 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC4P56524 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC14.8□□□□□ -0.04
HDAC4P56524 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC4P56524 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC4P56524 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC4P56524 OR8T1P-201ENST00000421347 918 ntBASIC14.8□□□□□ -0.04
HDAC4P56524 FNTAP2-201ENST00000430308 634 ntBASIC14.8□□□□□ -0.04
HDAC4P56524 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC14.8□□□□□ -0.04
HDAC4P56524 AK2P2-201ENST00000439142 405 ntBASIC14.8□□□□□ -0.04
HDAC4P56524 AL596276.2-201ENST00000447525 331 ntBASIC14.8□□□□□ -0.04
HDAC4P56524 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC4P56524 AKR7A2P1-201ENST00000460134 915 ntBASIC14.8□□□□□ -0.04
HDAC4P56524 AC022494.1-201ENST00000466044 728 ntBASIC14.8□□□□□ -0.04
HDAC4P56524 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC4P56524 HIST2H2BC-201ENST00000498492 580 ntBASIC14.8□□□□□ -0.04
HDAC4P56524 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC4P56524 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
HDAC4P56524 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC14.8□□□□□ -0.04
HDAC4P56524 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC4P56524 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC14.8□□□□□ -0.04
HDAC4P56524 AC100757.4-201ENST00000626934 759 ntBASIC14.8□□□□□ -0.04
HDAC4P56524 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC4P56524 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC14.8□□□□□ -0.04
HDAC4P56524 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC14.8□□□□□ -0.04
HDAC4P56524 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
HDAC4P56524 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC14.8□□□□□ -0.04
HDAC4P56524 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC14.8□□□□□ -0.04
HDAC4P56524 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC4P56524 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC4P56524 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC14.8□□□□□ -0.04
HDAC4P56524 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC14.8□□□□□ -0.04
HDAC4P56524 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC14.8□□□□□ -0.04
HDAC4P56524 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC14.8□□□□□ -0.04
HDAC4P56524 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC4P56524 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC14.8□□□□□ -0.04
HDAC4P56524 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
HDAC4P56524 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HDAC4P56524 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
HDAC4P56524 ACTN1-205ENST00000538545 2813 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HDAC4P56524 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HDAC4P56524 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
HDAC4P56524 ANKRD11-203ENST00000378330 9132 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
HDAC4P56524 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
HDAC4P56524 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HDAC4P56524 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HDAC4P56524 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HDAC4P56524 WDR24-201ENST00000248142 2763 ntTSL 5 BASIC14.79□□□□□ -0.04
HDAC4P56524 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
HDAC4P56524 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HDAC4P56524 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HDAC4P56524 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HDAC4P56524 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
HDAC4P56524 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
HDAC4P56524 FGGY-204ENST00000371218 2052 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HDAC4P56524 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
HDAC4P56524 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HDAC4P56524 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HDAC4P56524 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC14.79□□□□□ -0.04
HDAC4P56524 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC14.79□□□□□ -0.04
HDAC4P56524 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
HDAC4P56524 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HDAC4P56524 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HDAC4P56524 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC14.79□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms