Protein–RNA interactions for Protein: P0C091

FREM3, FRAS1-related extracellular matrix protein 3, humanhuman

Predictions only

Length 2,139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FREM3P0C091 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
FREM3P0C091 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
FREM3P0C091 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
FREM3P0C091 AC068760.1-201ENST00000493579 1953 ntBASIC12.83□□□□□ -0.36
FREM3P0C091 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
FREM3P0C091 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC12.83□□□□□ -0.36
FREM3P0C091 AL139158.3-201ENST00000641212 1562 ntBASIC12.83□□□□□ -0.36
FREM3P0C091 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC12.83□□□□□ -0.36
FREM3P0C091 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
FREM3P0C091 KRT8P43-201ENST00000406052 1458 ntBASIC12.83□□□□□ -0.36
FREM3P0C091 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC12.83□□□□□ -0.36
FREM3P0C091 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC12.83□□□□□ -0.36
FREM3P0C091 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC12.83□□□□□ -0.36
FREM3P0C091 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC12.83□□□□□ -0.36
FREM3P0C091 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
FREM3P0C091 STX3-207ENST00000633708 3111 ntTSL 5 BASIC12.83□□□□□ -0.36
FREM3P0C091 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC12.83□□□□□ -0.36
FREM3P0C091 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
FREM3P0C091 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
FREM3P0C091 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC12.83□□□□□ -0.36
FREM3P0C091 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
FREM3P0C091 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
FREM3P0C091 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
FREM3P0C091 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
FREM3P0C091 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
FREM3P0C091 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC12.83□□□□□ -0.36
FREM3P0C091 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
FREM3P0C091 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
FREM3P0C091 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
FREM3P0C091 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC12.83□□□□□ -0.36
FREM3P0C091 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC12.83□□□□□ -0.36
FREM3P0C091 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC12.83□□□□□ -0.36
FREM3P0C091 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC12.83□□□□□ -0.36
FREM3P0C091 TPM1-223ENST00000560445 485 ntTSL 3 BASIC12.83□□□□□ -0.36
FREM3P0C091 AC018635.2-201ENST00000608625 364 ntBASIC12.83□□□□□ -0.36
FREM3P0C091 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC12.83□□□□□ -0.36
FREM3P0C091 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
FREM3P0C091 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
FREM3P0C091 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
FREM3P0C091 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC12.83□□□□□ -0.36
FREM3P0C091 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
FREM3P0C091 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
FREM3P0C091 KLHL13-204ENST00000371882 3256 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
FREM3P0C091 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
FREM3P0C091 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
FREM3P0C091 AMT-256ENST00000638063 1783 ntTSL 5 BASIC12.83□□□□□ -0.36
FREM3P0C091 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
FREM3P0C091 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
FREM3P0C091 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
FREM3P0C091 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
FREM3P0C091 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
FREM3P0C091 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC12.83□□□□□ -0.36
FREM3P0C091 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC12.83□□□□□ -0.36
FREM3P0C091 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
FREM3P0C091 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC12.82□□□□□ -0.36
FREM3P0C091 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
FREM3P0C091 AL928654.5-201ENST00000624831 2501 ntBASIC12.82□□□□□ -0.36
FREM3P0C091 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
FREM3P0C091 ARHGAP23P1-201ENST00000562773 1937 ntBASIC12.82□□□□□ -0.36
FREM3P0C091 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC12.82□□□□□ -0.36
FREM3P0C091 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC12.82□□□□□ -0.36
FREM3P0C091 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC12.82□□□□□ -0.36
FREM3P0C091 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC12.82□□□□□ -0.36
FREM3P0C091 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC12.82□□□□□ -0.36
FREM3P0C091 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
FREM3P0C091 KRT8P24-201ENST00000560290 1559 ntBASIC12.82□□□□□ -0.36
FREM3P0C091 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC12.82□□□□□ -0.36
FREM3P0C091 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
FREM3P0C091 RRAGD-201ENST00000359203 4042 ntTSL 2 BASIC12.82□□□□□ -0.36
FREM3P0C091 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
FREM3P0C091 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
FREM3P0C091 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
FREM3P0C091 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
FREM3P0C091 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
FREM3P0C091 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
FREM3P0C091 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC12.82□□□□□ -0.36
FREM3P0C091 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
FREM3P0C091 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
FREM3P0C091 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC12.82□□□□□ -0.36
FREM3P0C091 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
FREM3P0C091 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
FREM3P0C091 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
FREM3P0C091 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
FREM3P0C091 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
FREM3P0C091 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
FREM3P0C091 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
FREM3P0C091 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
FREM3P0C091 TEKT4P2-202ENST00000559466 1312 ntBASIC12.82□□□□□ -0.36
FREM3P0C091 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
FREM3P0C091 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
FREM3P0C091 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
FREM3P0C091 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC12.82□□□□□ -0.36
FREM3P0C091 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
FREM3P0C091 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
FREM3P0C091 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
FREM3P0C091 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
FREM3P0C091 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
FREM3P0C091 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
FREM3P0C091 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC12.82□□□□□ -0.36
FREM3P0C091 HLA-DMA-203ENST00000395305 777 ntBASIC12.82□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms