Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ZC3H4Q9UPT8 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ZC3H4Q9UPT8 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
ZC3H4Q9UPT8 HTR3E-205ENST00000436361 1371 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ZC3H4Q9UPT8 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
ZC3H4Q9UPT8 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ZC3H4Q9UPT8 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ZC3H4Q9UPT8 AL390755.1-201ENST00000623716 2027 ntBASIC16.9■□□□□ 0.3
ZC3H4Q9UPT8 TAMM41-201ENST00000273037 1297 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ZC3H4Q9UPT8 WFDC2-203ENST00000342873 818 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ZC3H4Q9UPT8 KRTAP12-2-201ENST00000360770 739 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
ZC3H4Q9UPT8 TUBB2BP1-201ENST00000404155 871 ntBASIC16.9■□□□□ 0.3
ZC3H4Q9UPT8 AC026884.1-201ENST00000418296 457 ntBASIC16.9■□□□□ 0.3
ZC3H4Q9UPT8 AC093106.1-201ENST00000437271 352 ntBASIC16.9■□□□□ 0.3
ZC3H4Q9UPT8 DLEU2-205ENST00000443587 705 ntTSL 5 BASIC16.9■□□□□ 0.3
ZC3H4Q9UPT8 AC093700.1-201ENST00000503348 717 ntBASIC16.9■□□□□ 0.3
ZC3H4Q9UPT8 AC122694.1-201ENST00000510987 563 ntTSL 4 BASIC16.9■□□□□ 0.3
ZC3H4Q9UPT8 AC073896.3-201ENST00000546789 437 ntTSL 5 BASIC16.9■□□□□ 0.3
ZC3H4Q9UPT8 AL445363.2-201ENST00000554608 837 ntTSL 2 BASIC16.9■□□□□ 0.3
ZC3H4Q9UPT8 AC120498.5-201ENST00000561757 299 ntBASIC16.9■□□□□ 0.3
ZC3H4Q9UPT8 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC16.9■□□□□ 0.3
ZC3H4Q9UPT8 LINC00969-241ENST00000600527 852 ntTSL 5 BASIC16.9■□□□□ 0.3
ZC3H4Q9UPT8 CBR3-AS1-206ENST00000608632 659 ntTSL 5 BASIC16.9■□□□□ 0.3
ZC3H4Q9UPT8 AL445363.1-201ENST00000623749 952 ntTSL 2 BASIC16.9■□□□□ 0.3
ZC3H4Q9UPT8 AC005609.5-201ENST00000624712 1053 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ZC3H4Q9UPT8 LINC00969-322ENST00000630170 584 ntTSL 5 BASIC16.9■□□□□ 0.3
ZC3H4Q9UPT8 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ZC3H4Q9UPT8 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
ZC3H4Q9UPT8 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ZC3H4Q9UPT8 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ZC3H4Q9UPT8 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ZC3H4Q9UPT8 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 DEDD-202ENST00000368006 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 SFXN4-201ENST00000355697 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 RFX8-201ENST00000428343 1686 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 CLUAP1-201ENST00000341633 1643 ntTSL 5 BASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 RPL4P6-201ENST00000438116 1304 ntBASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 AC064801.2-201ENST00000625052 1303 ntBASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 CELA3A-201ENST00000290122 887 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 ECHDC2-201ENST00000358358 1126 ntTSL 2 BASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 TMSB4X-202ENST00000380635 767 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 CPSF4L-202ENST00000397671 1275 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 FTH1P18-201ENST00000412071 549 ntBASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 AKT3-IT1-201ENST00000417120 517 ntTSL 5 BASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 AL355482.2-201ENST00000428646 1145 ntTSL 2 BASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 HLA-W-207ENST00000439514 771 ntBASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 RAI1-AS1-201ENST00000443696 724 ntTSL 5 BASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 GULOP-201ENST00000454030 748 ntBASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 DPY19L2P4-201ENST00000479881 442 ntBASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 TMA16-204ENST00000508268 608 ntTSL 2 BASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 C9orf135-205ENST00000527647 748 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 AC009065.4-201ENST00000563734 543 ntTSL 3 BASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 TPST2P1-201ENST00000564073 1102 ntBASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 AC011483.3-201ENST00000601506 826 ntTSL 3 BASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 FXYD3-206ENST00000603524 742 ntTSL 3 BASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 FXYD3-211ENST00000604804 564 ntTSL 4 BASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 AC009041.4-201ENST00000620075 638 ntBASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 AL590556.2-202ENST00000636906 844 ntBASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 TUBAL3-201ENST00000380419 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ZC3H4Q9UPT8 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ZC3H4Q9UPT8 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ZC3H4Q9UPT8 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
ZC3H4Q9UPT8 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ZC3H4Q9UPT8 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
ZC3H4Q9UPT8 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC16.88■□□□□ 0.29
ZC3H4Q9UPT8 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC16.88■□□□□ 0.29
ZC3H4Q9UPT8 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ZC3H4Q9UPT8 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC16.88■□□□□ 0.29
ZC3H4Q9UPT8 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
ZC3H4Q9UPT8 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
ZC3H4Q9UPT8 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
ZC3H4Q9UPT8 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ZC3H4Q9UPT8 MAD2L1BP-201ENST00000372171 1301 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ZC3H4Q9UPT8 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ZC3H4Q9UPT8 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
ZC3H4Q9UPT8 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC16.88■□□□□ 0.29
ZC3H4Q9UPT8 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
ZC3H4Q9UPT8 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms