Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 OS9-204ENST00000389146 2091 ntTSL 2 BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 CICP17-201ENST00000418553 2377 ntBASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 FAM90A2P-201ENST00000511144 1395 ntBASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 FAM90A25P-201ENST00000528404 1395 ntBASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 GUF1-201ENST00000281543 4449 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 KRT17P5-201ENST00000332088 839 ntBASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 AC007274.2-201ENST00000421675 662 ntBASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 NAT9-220ENST00000582870 896 ntTSL 5 BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 PPA1-206ENST00000625364 644 ntTSL 5 BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 C1QTNF1-204ENST00000392445 2833 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 GRWD1-201ENST00000253237 5571 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 SHMT1P1-201ENST00000419974 1312 ntBASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 AC016397.2-201ENST00000624848 1985 ntBASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 CCBE1-201ENST00000398179 5979 ntTSL 5 BASIC14.11□□□□□ -0.15
TRIM39Q9HCM9 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 AC118758.2-201ENST00000614242 2813 ntBASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 AL356585.2-201ENST00000625078 2396 ntBASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 IMP3P2-201ENST00000489760 475 ntBASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 AC116345.2-201ENST00000512837 523 ntBASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 AC114947.1-202ENST00000514136 344 ntBASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 FGFR3P5-201ENST00000564496 886 ntBASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC14.1□□□□□ -0.15
TRIM39Q9HCM9 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC14.1□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms