Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
SUMO3P55854 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
SUMO3P55854 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
SUMO3P55854 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
SUMO3P55854 NUDT2-203ENST00000379158 1075 ntAPPRIS P1 TSL 3 BASIC12.79□□□□□ -0.36
SUMO3P55854 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
SUMO3P55854 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC12.79□□□□□ -0.36
SUMO3P55854 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC12.79□□□□□ -0.36
SUMO3P55854 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC12.79□□□□□ -0.36
SUMO3P55854 AC007274.2-201ENST00000421675 662 ntBASIC12.79□□□□□ -0.36
SUMO3P55854 AP000358.1-201ENST00000456260 156 ntBASIC12.79□□□□□ -0.36
SUMO3P55854 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC12.79□□□□□ -0.36
SUMO3P55854 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC12.79□□□□□ -0.36
SUMO3P55854 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC12.79□□□□□ -0.36
SUMO3P55854 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC12.79□□□□□ -0.36
SUMO3P55854 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC12.79□□□□□ -0.36
SUMO3P55854 RN7SL665P-201ENST00000578793 300 ntBASIC12.79□□□□□ -0.36
SUMO3P55854 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC12.79□□□□□ -0.36
SUMO3P55854 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
SUMO3P55854 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
SUMO3P55854 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
SUMO3P55854 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
SUMO3P55854 GJB1-201ENST00000361726 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
SUMO3P55854 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
SUMO3P55854 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
SUMO3P55854 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
SUMO3P55854 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
SUMO3P55854 TEKT4P2-202ENST00000559466 1312 ntBASIC12.79□□□□□ -0.36
SUMO3P55854 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC12.79□□□□□ -0.36
SUMO3P55854 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
SUMO3P55854 POPDC2-201ENST00000264231 1679 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
SUMO3P55854 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
SUMO3P55854 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
SUMO3P55854 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC12.79□□□□□ -0.36
SUMO3P55854 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
SUMO3P55854 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
SUMO3P55854 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
SUMO3P55854 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC12.79□□□□□ -0.36
SUMO3P55854 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
SUMO3P55854 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
SUMO3P55854 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
SUMO3P55854 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
SUMO3P55854 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
SUMO3P55854 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
SUMO3P55854 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC12.79□□□□□ -0.36
SUMO3P55854 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
SUMO3P55854 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
SUMO3P55854 SALL2-205ENST00000611430 1466 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
SUMO3P55854 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
SUMO3P55854 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
SUMO3P55854 AL591122.2-201ENST00000624125 1853 ntBASIC12.78□□□□□ -0.36
SUMO3P55854 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
SUMO3P55854 AC015909.5-201ENST00000624336 2266 ntBASIC12.78□□□□□ -0.36
SUMO3P55854 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC12.78□□□□□ -0.36
SUMO3P55854 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
SUMO3P55854 DMBT1P1-203ENST00000636837 4628 ntBASIC12.78□□□□□ -0.36
SUMO3P55854 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
SUMO3P55854 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
SUMO3P55854 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
SUMO3P55854 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC12.78□□□□□ -0.36
SUMO3P55854 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
SUMO3P55854 FMO6P-201ENST00000236166 1620 ntBASIC12.78□□□□□ -0.36
SUMO3P55854 CNBP-203ENST00000446936 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
SUMO3P55854 CNBP-204ENST00000451728 1641 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
SUMO3P55854 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC12.78□□□□□ -0.36
SUMO3P55854 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
SUMO3P55854 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
SUMO3P55854 SYT1-204ENST00000457153 4592 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
SUMO3P55854 GPNMB-203ENST00000409458 1673 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
SUMO3P55854 LINC01535-206ENST00000592712 1699 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
SUMO3P55854 AC093462.1-201ENST00000621167 1683 ntBASIC12.78□□□□□ -0.36
SUMO3P55854 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
SUMO3P55854 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
SUMO3P55854 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
SUMO3P55854 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC12.78□□□□□ -0.36
SUMO3P55854 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
SUMO3P55854 MIR557-201ENST00000385239 98 ntBASIC12.78□□□□□ -0.36
SUMO3P55854 AL662890.1-201ENST00000396818 632 ntBASIC12.78□□□□□ -0.36
SUMO3P55854 SNORA50C-201ENST00000408535 133 ntBASIC12.78□□□□□ -0.36
SUMO3P55854 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC12.78□□□□□ -0.36
SUMO3P55854 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC12.78□□□□□ -0.36
SUMO3P55854 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC12.78□□□□□ -0.36
SUMO3P55854 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
SUMO3P55854 SUPT4H1P2-201ENST00000501248 353 ntBASIC12.78□□□□□ -0.36
SUMO3P55854 COQ10BP2-201ENST00000513804 724 ntBASIC12.78□□□□□ -0.36
SUMO3P55854 NEU3-202ENST00000526068 431 ntTSL 2 BASIC12.78□□□□□ -0.36
SUMO3P55854 RTN3P1-201ENST00000536295 711 ntBASIC12.78□□□□□ -0.36
SUMO3P55854 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC12.78□□□□□ -0.36
SUMO3P55854 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC12.78□□□□□ -0.36
SUMO3P55854 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC12.78□□□□□ -0.36
SUMO3P55854 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
SUMO3P55854 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC12.78□□□□□ -0.36
SUMO3P55854 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC12.78□□□□□ -0.36
SUMO3P55854 AC132825.4-202ENST00000578792 434 ntBASIC12.78□□□□□ -0.36
SUMO3P55854 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC12.78□□□□□ -0.36
SUMO3P55854 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC12.78□□□□□ -0.36
SUMO3P55854 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC12.78□□□□□ -0.36
SUMO3P55854 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC12.78□□□□□ -0.36
SUMO3P55854 ADAMTSL4-AS1-203ENST00000617352 1036 ntTSL 5 BASIC12.78□□□□□ -0.36
SUMO3P55854 SNORA50.1-201ENST00000628590 135 ntBASIC12.78□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms