Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
SOX2P48431 PRDM16-208ENST00000514189 4236 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
SOX2P48431 USF1-202ENST00000368020 1717 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
SOX2P48431 AGAP2-203ENST00000547588 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
SOX2P48431 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
SOX2P48431 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
SOX2P48431 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
SOX2P48431 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
SOX2P48431 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
SOX2P48431 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
SOX2P48431 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
SOX2P48431 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
SOX2P48431 CD8B2-202ENST00000417670 633 ntBASIC12.55□□□□□ -0.4
SOX2P48431 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC12.55□□□□□ -0.4
SOX2P48431 FAM8A4P-201ENST00000435433 1213 ntBASIC12.55□□□□□ -0.4
SOX2P48431 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
SOX2P48431 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
SOX2P48431 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC12.55□□□□□ -0.4
SOX2P48431 TSPY16P-201ENST00000449843 468 ntBASIC12.55□□□□□ -0.4
SOX2P48431 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC12.55□□□□□ -0.4
SOX2P48431 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
SOX2P48431 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC12.55□□□□□ -0.4
SOX2P48431 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
SOX2P48431 AP003171.2-201ENST00000528208 925 ntBASIC12.55□□□□□ -0.4
SOX2P48431 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC12.55□□□□□ -0.4
SOX2P48431 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC12.55□□□□□ -0.4
SOX2P48431 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC12.55□□□□□ -0.4
SOX2P48431 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC12.55□□□□□ -0.4
SOX2P48431 PML-210ENST00000563500 4502 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
SOX2P48431 MSH5-202ENST00000375740 2669 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
SOX2P48431 ZNF654-204ENST00000636215 6446 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
SOX2P48431 KAT7-204ENST00000454930 1774 ntTSL 2 BASIC12.55□□□□□ -0.4
SOX2P48431 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
SOX2P48431 SYNGAP1-208ENST00000629380 9862 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
SOX2P48431 PLA2G4B-201ENST00000452633 2985 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
SOX2P48431 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
SOX2P48431 AL645937.6-201ENST00000641122 3727 ntBASIC12.55□□□□□ -0.4
SOX2P48431 CCDC117-201ENST00000249064 3985 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
SOX2P48431 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
SOX2P48431 NLGN3-201ENST00000358741 3046 ntAPPRIS P4 TSL 5 BASIC12.55□□□□□ -0.4
SOX2P48431 MSH2-206ENST00000543555 3024 ntTSL 2 BASIC12.55□□□□□ -0.4
SOX2P48431 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
SOX2P48431 AC092171.2-201ENST00000444210 3251 ntTSL 5 BASIC12.55□□□□□ -0.4
SOX2P48431 USP39-207ENST00000450066 2086 ntTSL 2 BASIC12.55□□□□□ -0.4
SOX2P48431 SCN2B-201ENST00000278947 5826 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
SOX2P48431 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
SOX2P48431 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
SOX2P48431 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC12.55□□□□□ -0.4
SOX2P48431 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC12.55□□□□□ -0.4
SOX2P48431 AP002761.4-201ENST00000565433 3361 ntBASIC12.55□□□□□ -0.4
SOX2P48431 RNF43-205ENST00000581868 2610 ntTSL 2 BASIC12.55□□□□□ -0.4
SOX2P48431 SNED1-201ENST00000310397 8174 ntAPPRIS P2 TSL 5 BASIC12.55□□□□□ -0.4
SOX2P48431 WAPL-206ENST00000618527 6152 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
SOX2P48431 ZIK1-204ENST00000597850 4181 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
SOX2P48431 SNCA-204ENST00000394989 3167 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
SOX2P48431 AAR2-202ENST00000373932 2689 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
SOX2P48431 DRD2-201ENST00000346454 2433 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
SOX2P48431 STAG3-206ENST00000426455 4450 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
SOX2P48431 VHL-201ENST00000256474 3737 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
SOX2P48431 SLC1A1-201ENST00000262352 3722 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
SOX2P48431 MED16-202ENST00000312090 3229 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
SOX2P48431 RAPGEF1-201ENST00000372189 6085 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
SOX2P48431 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
SOX2P48431 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC12.54□□□□□ -0.4
SOX2P48431 RC3H2-205ENST00000423239 3623 ntTSL 5 BASIC12.54□□□□□ -0.4
SOX2P48431 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
SOX2P48431 OPRL1-202ENST00000349451 3369 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
SOX2P48431 ADCY4-202ENST00000418030 3353 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
SOX2P48431 PEG10-205ENST00000612748 2585 ntAPPRIS P5 TSL 5 BASIC12.54□□□□□ -0.4
SOX2P48431 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
SOX2P48431 ADGRA1-201ENST00000392606 3438 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
SOX2P48431 POLD1-210ENST00000599857 3435 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
SOX2P48431 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC12.54□□□□□ -0.4
SOX2P48431 CNTD1-204ENST00000588408 2369 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
SOX2P48431 PARD6B-201ENST00000371610 4615 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
SOX2P48431 PGAP2-202ENST00000300730 1843 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
SOX2P48431 CCT6B-201ENST00000314144 1838 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
SOX2P48431 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
SOX2P48431 FSTL4-207ENST00000621681 2660 ntTSL 5 BASIC12.54□□□□□ -0.4
SOX2P48431 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
SOX2P48431 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC12.54□□□□□ -0.4
SOX2P48431 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
SOX2P48431 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
SOX2P48431 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
SOX2P48431 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC12.54□□□□□ -0.4
SOX2P48431 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC12.54□□□□□ -0.4
SOX2P48431 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC12.54□□□□□ -0.4
SOX2P48431 ACTG1P3-201ENST00000431775 1114 ntBASIC12.54□□□□□ -0.4
SOX2P48431 INE1-201ENST00000456273 945 ntBASIC12.54□□□□□ -0.4
SOX2P48431 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC12.54□□□□□ -0.4
SOX2P48431 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC12.54□□□□□ -0.4
SOX2P48431 AC140912.1-201ENST00000577171 1054 ntBASIC12.54□□□□□ -0.4
SOX2P48431 MIR5189-201ENST00000577370 114 ntBASIC12.54□□□□□ -0.4
SOX2P48431 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC12.54□□□□□ -0.4
SOX2P48431 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
SOX2P48431 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
SOX2P48431 PPP1R26P2-201ENST00000611403 3595 ntBASIC12.54□□□□□ -0.4
SOX2P48431 SLC39A6-204ENST00000590986 3003 ntAPPRIS P3 TSL 5 BASIC12.54□□□□□ -0.4
SOX2P48431 EIF2AK1-201ENST00000199389 4469 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
SOX2P48431 TTYH3-204ENST00000407643 4537 ntTSL 5 BASIC12.54□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms