Protein–RNA interactions for Protein: Q8IX30

SCUBE3, Signal peptide, CUB and EGF-like domain-containing protein 3, humanhuman

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3Q8IX30 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
SCUBE3Q8IX30 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC14.96□□□□□ -0.02
SCUBE3Q8IX30 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC14.96□□□□□ -0.02
SCUBE3Q8IX30 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
SCUBE3Q8IX30 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.02
SCUBE3Q8IX30 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
SCUBE3Q8IX30 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.02
SCUBE3Q8IX30 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
SCUBE3Q8IX30 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 KRT8P19-201ENST00000551916 1455 ntBASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 LINC01837-201ENST00000590021 1320 ntTSL 5 BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 AC104581.4-201ENST00000623126 3052 ntBASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 KRT17P5-201ENST00000332088 839 ntBASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 BANF1P3-201ENST00000412556 261 ntBASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 MSRA-203ENST00000441698 788 ntTSL 2 BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 AC006335.1-201ENST00000445200 547 ntBASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 AC106732.1-201ENST00000512458 550 ntTSL 4 BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 ALG1L13P-202ENST00000519320 584 ntBASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 Metazoa_SRP.12-201ENST00000553249 268 ntBASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 KRT8P1-201ENST00000557533 1207 ntBASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 IRF3-215ENST00000596822 823 ntTSL 3 BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 AC067931.2-201ENST00000623655 2003 ntBASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 AL359881.3-201ENST00000602640 1721 ntBASIC14.95□□□□□ -0.02
SCUBE3Q8IX30 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SCUBE3Q8IX30 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SCUBE3Q8IX30 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC14.94□□□□□ -0.02
SCUBE3Q8IX30 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
SCUBE3Q8IX30 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SCUBE3Q8IX30 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
SCUBE3Q8IX30 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
SCUBE3Q8IX30 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SCUBE3Q8IX30 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SCUBE3Q8IX30 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC14.94□□□□□ -0.02
SCUBE3Q8IX30 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
SCUBE3Q8IX30 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
SCUBE3Q8IX30 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SCUBE3Q8IX30 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SCUBE3Q8IX30 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SCUBE3Q8IX30 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
SCUBE3Q8IX30 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SCUBE3Q8IX30 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC14.94□□□□□ -0.02
SCUBE3Q8IX30 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
SCUBE3Q8IX30 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SCUBE3Q8IX30 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SCUBE3Q8IX30 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SCUBE3Q8IX30 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SCUBE3Q8IX30 PDIA3P2-201ENST00000428073 158 ntBASIC14.94□□□□□ -0.02
SCUBE3Q8IX30 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC14.94□□□□□ -0.02
SCUBE3Q8IX30 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SCUBE3Q8IX30 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC14.94□□□□□ -0.02
SCUBE3Q8IX30 RPS2P36-201ENST00000456516 831 ntBASIC14.94□□□□□ -0.02
SCUBE3Q8IX30 AL139353.2-202ENST00000502430 1213 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SCUBE3Q8IX30 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC14.94□□□□□ -0.02
SCUBE3Q8IX30 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SCUBE3Q8IX30 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC14.94□□□□□ -0.02
SCUBE3Q8IX30 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC14.94□□□□□ -0.02
SCUBE3Q8IX30 AL109837.1-201ENST00000603272 613 ntBASIC14.94□□□□□ -0.02
SCUBE3Q8IX30 U62317.3-201ENST00000608319 855 ntBASIC14.94□□□□□ -0.02
SCUBE3Q8IX30 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC14.94□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms