Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 FAM156A-208ENST00000615092 2098 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
NUP98P52948 MPZL3-204ENST00000527472 1381 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
NUP98P52948 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC17.09■□□□□ 0.33
NUP98P52948 NRG1-211ENST00000520502 1330 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
NUP98P52948 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
NUP98P52948 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC17.09■□□□□ 0.33
NUP98P52948 C20orf141-201ENST00000380589 730 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NUP98P52948 PRKAR2A-AS1-203ENST00000431705 592 ntTSL 4 BASIC17.09■□□□□ 0.33
NUP98P52948 TCEAL4-206ENST00000468024 1135 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
NUP98P52948 AC073896.4-201ENST00000553176 403 ntTSL 2 BASIC17.09■□□□□ 0.33
NUP98P52948 AC009163.5-202ENST00000571737 466 ntTSL 3 BASIC17.09■□□□□ 0.33
NUP98P52948 PRR20FP-201ENST00000603320 180 ntBASIC17.09■□□□□ 0.33
NUP98P52948 NRSN2-206ENST00000608736 712 ntTSL 3 BASIC17.09■□□□□ 0.33
NUP98P52948 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
NUP98P52948 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC17.09■□□□□ 0.33
NUP98P52948 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
NUP98P52948 SERPINA13P-201ENST00000469935 1718 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
NUP98P52948 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NUP98P52948 TMEM78-201ENST00000323223 2175 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
NUP98P52948 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
NUP98P52948 NAAA-203ENST00000505594 1425 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
NUP98P52948 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
NUP98P52948 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.08■□□□□ 0.33
NUP98P52948 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
NUP98P52948 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
NUP98P52948 PMM1-201ENST00000216259 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
NUP98P52948 INO80C-202ENST00000334598 974 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
NUP98P52948 CCER1-201ENST00000358859 2962 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
NUP98P52948 VASH2-205ENST00000366967 1206 ntTSL 2 BASIC17.08■□□□□ 0.33
NUP98P52948 MIR632-201ENST00000385193 94 ntBASIC17.08■□□□□ 0.33
NUP98P52948 KRTAP2-3-201ENST00000391418 875 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
NUP98P52948 SDCBP2P1-201ENST00000416115 614 ntBASIC17.08■□□□□ 0.33
NUP98P52948 SAPCD1-AS1-202ENST00000419679 461 ntTSL 3 BASIC17.08■□□□□ 0.33
NUP98P52948 CMPK1-204ENST00000450808 950 ntTSL 2 BASIC17.08■□□□□ 0.33
NUP98P52948 BMF-206ENST00000558774 671 ntTSL 3 BASIC17.08■□□□□ 0.33
NUP98P52948 RBFOX3-206ENST00000582043 1143 ntTSL 5 BASIC17.08■□□□□ 0.33
NUP98P52948 TEX26-AS1-205ENST00000585870 2053 ntTSL 2 BASIC17.08■□□□□ 0.32
NUP98P52948 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
NUP98P52948 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
NUP98P52948 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
NUP98P52948 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
NUP98P52948 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
NUP98P52948 F10-201ENST00000375551 1509 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
NUP98P52948 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
NUP98P52948 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
NUP98P52948 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
NUP98P52948 AP3M2-202ENST00000396926 3545 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
NUP98P52948 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
NUP98P52948 AP000437.1-201ENST00000624057 2085 ntBASIC17.08■□□□□ 0.32
NUP98P52948 SULT1A1-203ENST00000395607 1386 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
NUP98P52948 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
NUP98P52948 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
NUP98P52948 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
NUP98P52948 APOD-201ENST00000343267 1130 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
NUP98P52948 FAM27E5-201ENST00000426869 682 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
NUP98P52948 LINC00824-204ENST00000520766 597 ntTSL 5 BASIC17.07■□□□□ 0.32
NUP98P52948 AC099524.1-203ENST00000565272 756 ntTSL 5 BASIC17.07■□□□□ 0.32
NUP98P52948 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
NUP98P52948 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
NUP98P52948 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
NUP98P52948 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NUP98P52948 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
NUP98P52948 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
NUP98P52948 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
NUP98P52948 NAALADL1-201ENST00000340252 2376 ntTSL 5 BASIC17.07■□□□□ 0.32
NUP98P52948 OASL-202ENST00000339275 1492 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
NUP98P52948 MARK2P9-201ENST00000430958 1727 ntBASIC17.07■□□□□ 0.32
NUP98P52948 SETMAR-205ENST00000425863 1657 ntTSL 2 BASIC17.07■□□□□ 0.32
NUP98P52948 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NUP98P52948 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC17.07■□□□□ 0.32
NUP98P52948 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC17.07■□□□□ 0.32
NUP98P52948 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
NUP98P52948 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
NUP98P52948 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
NUP98P52948 ZSCAN5B-202ENST00000586855 2059 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
NUP98P52948 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
NUP98P52948 TREM2-202ENST00000373113 1044 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
NUP98P52948 AL589935.1-203ENST00000412751 465 ntTSL 3 BASIC17.07■□□□□ 0.32
NUP98P52948 CDK4P1-201ENST00000454213 828 ntBASIC17.07■□□□□ 0.32
NUP98P52948 PRKACA-208ENST00000589994 1127 ntTSL 2 BASIC17.07■□□□□ 0.32
NUP98P52948 FAM90A28P-201ENST00000596881 489 ntTSL 5 BASIC17.07■□□□□ 0.32
NUP98P52948 AC008622.3-201ENST00000621170 600 ntBASIC17.07■□□□□ 0.32
NUP98P52948 PAX6-237ENST00000638696 1203 ntTSL 5 BASIC17.07■□□□□ 0.32
NUP98P52948 MAD2L1BP-202ENST00000451025 1517 ntTSL 2 BASIC17.07■□□□□ 0.32
NUP98P52948 LINC00967-203ENST00000518035 1502 ntTSL 2 BASIC17.07■□□□□ 0.32
NUP98P52948 TRAPPC4-214ENST00000533632 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NUP98P52948 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NUP98P52948 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC17.07■□□□□ 0.32
NUP98P52948 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC17.07■□□□□ 0.32
NUP98P52948 DLGAP1-202ENST00000400145 2188 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
NUP98P52948 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
NUP98P52948 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC17.07■□□□□ 0.32
NUP98P52948 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
NUP98P52948 RDH12-203ENST00000551171 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NUP98P52948 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
NUP98P52948 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC17.06■□□□□ 0.32
NUP98P52948 TUBB2A-201ENST00000333628 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NUP98P52948 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
NUP98P52948 AC008536.3-201ENST00000623282 1599 ntBASIC17.06■□□□□ 0.32
NUP98P52948 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms