Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
NKX2-2O95096 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
NKX2-2O95096 AC009474.1-201ENST00000455096 1565 ntBASIC13.06□□□□□ -0.32
NKX2-2O95096 AP3M2-202ENST00000396926 3545 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
NKX2-2O95096 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
NKX2-2O95096 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
NKX2-2O95096 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
NKX2-2O95096 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
NKX2-2O95096 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
NKX2-2O95096 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
NKX2-2O95096 AC135782.3-201ENST00000562782 2105 ntBASIC13.06□□□□□ -0.32
NKX2-2O95096 AC020907.1-201ENST00000616460 1350 ntBASIC13.06□□□□□ -0.32
NKX2-2O95096 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
NKX2-2O95096 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
NKX2-2O95096 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
NKX2-2O95096 PPHLN1-206ENST00000395580 1693 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
NKX2-2O95096 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
NKX2-2O95096 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
NKX2-2O95096 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
NKX2-2O95096 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC13.05□□□□□ -0.32
NKX2-2O95096 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC13.05□□□□□ -0.32
NKX2-2O95096 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC13.05□□□□□ -0.32
NKX2-2O95096 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC13.05□□□□□ -0.32
NKX2-2O95096 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
NKX2-2O95096 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
NKX2-2O95096 MED6-201ENST00000256379 1995 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
NKX2-2O95096 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC13.05□□□□□ -0.32
NKX2-2O95096 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC13.05□□□□□ -0.32
NKX2-2O95096 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
NKX2-2O95096 SIGLEC6-201ENST00000343300 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
NKX2-2O95096 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
NKX2-2O95096 LAIR1-201ENST00000348231 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
NKX2-2O95096 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
NKX2-2O95096 GMPR2-206ENST00000557854 2025 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
NKX2-2O95096 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC13.05□□□□□ -0.32
NKX2-2O95096 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
NKX2-2O95096 ASS1-203ENST00000372393 1548 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
NKX2-2O95096 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC13.05□□□□□ -0.32
NKX2-2O95096 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
NKX2-2O95096 ACTG1P2-201ENST00000415776 1125 ntBASIC13.05□□□□□ -0.32
NKX2-2O95096 DEF8-202ENST00000418391 852 ntTSL 2 BASIC13.05□□□□□ -0.32
NKX2-2O95096 ACTG1P11-201ENST00000425411 1125 ntBASIC13.05□□□□□ -0.32
NKX2-2O95096 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC13.05□□□□□ -0.32
NKX2-2O95096 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC13.05□□□□□ -0.32
NKX2-2O95096 SPTLC1P5-201ENST00000450718 252 ntBASIC13.05□□□□□ -0.32
NKX2-2O95096 HIST2H2BC-201ENST00000498492 580 ntBASIC13.05□□□□□ -0.32
NKX2-2O95096 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC13.05□□□□□ -0.32
NKX2-2O95096 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC13.05□□□□□ -0.32
NKX2-2O95096 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
NKX2-2O95096 NDUFB10P1-201ENST00000567319 521 ntBASIC13.05□□□□□ -0.32
NKX2-2O95096 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC13.05□□□□□ -0.32
NKX2-2O95096 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC13.05□□□□□ -0.32
NKX2-2O95096 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
NKX2-2O95096 ENO2-201ENST00000229277 2423 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
NKX2-2O95096 ZNF821-214ENST00000565601 1858 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
NKX2-2O95096 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
NKX2-2O95096 SLC37A3-201ENST00000326232 3349 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
NKX2-2O95096 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
NKX2-2O95096 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
NKX2-2O95096 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
NKX2-2O95096 CNBP-203ENST00000446936 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC13.05□□□□□ -0.32
NKX2-2O95096 CNBP-204ENST00000451728 1641 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
NKX2-2O95096 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
NKX2-2O95096 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
NKX2-2O95096 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
NKX2-2O95096 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
NKX2-2O95096 PPT1-203ENST00000433473 2267 ntAPPRIS ALT1 TSL 1 (best) BASIC13.05□□□□□ -0.32
NKX2-2O95096 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
NKX2-2O95096 AC093462.1-201ENST00000621167 1683 ntBASIC13.05□□□□□ -0.32
NKX2-2O95096 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC13.05□□□□□ -0.32
NKX2-2O95096 PP14571-202ENST00000404891 2017 ntTSL 2 BASIC13.05□□□□□ -0.32
NKX2-2O95096 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
NKX2-2O95096 HSPA6-201ENST00000309758 2371 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
NKX2-2O95096 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
NKX2-2O95096 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
NKX2-2O95096 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
NKX2-2O95096 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC13.04□□□□□ -0.32
NKX2-2O95096 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
NKX2-2O95096 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
NKX2-2O95096 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
NKX2-2O95096 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
NKX2-2O95096 KLHL32-206ENST00000544166 2864 ntTSL 2 BASIC13.04□□□□□ -0.32
NKX2-2O95096 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC13.04□□□□□ -0.32
NKX2-2O95096 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC13.04□□□□□ -0.32
NKX2-2O95096 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
NKX2-2O95096 SARS-202ENST00000369923 1882 ntTSL 5 BASIC13.04□□□□□ -0.32
NKX2-2O95096 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
NKX2-2O95096 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC13.04□□□□□ -0.32
NKX2-2O95096 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC13.04□□□□□ -0.32
NKX2-2O95096 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
NKX2-2O95096 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
NKX2-2O95096 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
NKX2-2O95096 AP4M1-204ENST00000421755 1572 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
NKX2-2O95096 ATP6V0A1-206ENST00000585525 2679 ntTSL 2 BASIC13.04□□□□□ -0.32
NKX2-2O95096 AL359845.1-201ENST00000458202 1648 ntBASIC13.04□□□□□ -0.32
NKX2-2O95096 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
NKX2-2O95096 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
NKX2-2O95096 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
NKX2-2O95096 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC13.04□□□□□ -0.32
NKX2-2O95096 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms