Protein–RNA interactions for Protein: Q92544

TM9SF4, Transmembrane 9 superfamily member 4, humanhuman

Predictions only

Length 642 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4Q92544 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
TM9SF4Q92544 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
TM9SF4Q92544 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
TM9SF4Q92544 AL627231.1-201ENST00000394467 1125 ntBASIC13.5□□□□□ -0.25
TM9SF4Q92544 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC13.5□□□□□ -0.25
TM9SF4Q92544 DNAJB1P1-201ENST00000429417 1024 ntBASIC13.5□□□□□ -0.25
TM9SF4Q92544 AC069218.1-201ENST00000435269 762 ntBASIC13.5□□□□□ -0.25
TM9SF4Q92544 FGFR3P1-201ENST00000449999 601 ntBASIC13.5□□□□□ -0.25
TM9SF4Q92544 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC13.5□□□□□ -0.25
TM9SF4Q92544 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC13.5□□□□□ -0.25
TM9SF4Q92544 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC13.5□□□□□ -0.25
TM9SF4Q92544 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC13.5□□□□□ -0.25
TM9SF4Q92544 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC13.5□□□□□ -0.25
TM9SF4Q92544 NEU3-205ENST00000531619 582 ntTSL 5 BASIC13.5□□□□□ -0.25
TM9SF4Q92544 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
TM9SF4Q92544 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC13.5□□□□□ -0.25
TM9SF4Q92544 NAT9-220ENST00000582870 896 ntTSL 5 BASIC13.5□□□□□ -0.25
TM9SF4Q92544 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
TM9SF4Q92544 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC13.5□□□□□ -0.25
TM9SF4Q92544 MIR6769A-201ENST00000617340 73 ntBASIC13.5□□□□□ -0.25
TM9SF4Q92544 AGGF1P1-201ENST00000509500 2073 ntBASIC13.5□□□□□ -0.25
TM9SF4Q92544 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
TM9SF4Q92544 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC13.5□□□□□ -0.25
TM9SF4Q92544 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
TM9SF4Q92544 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
TM9SF4Q92544 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
TM9SF4Q92544 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
TM9SF4Q92544 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC13.5□□□□□ -0.25
TM9SF4Q92544 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
TM9SF4Q92544 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
TM9SF4Q92544 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
TM9SF4Q92544 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC13.5□□□□□ -0.25
TM9SF4Q92544 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
TM9SF4Q92544 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
TM9SF4Q92544 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
TM9SF4Q92544 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
TM9SF4Q92544 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
TM9SF4Q92544 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC13.49□□□□□ -0.25
TM9SF4Q92544 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC13.49□□□□□ -0.25
TM9SF4Q92544 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
TM9SF4Q92544 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC13.49□□□□□ -0.25
TM9SF4Q92544 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
TM9SF4Q92544 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
TM9SF4Q92544 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC13.49□□□□□ -0.25
TM9SF4Q92544 JMJD6-208ENST00000617192 5517 ntTSL 5 BASIC13.49□□□□□ -0.25
TM9SF4Q92544 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC13.49□□□□□ -0.25
TM9SF4Q92544 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
TM9SF4Q92544 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
TM9SF4Q92544 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
TM9SF4Q92544 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
TM9SF4Q92544 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC13.49□□□□□ -0.25
TM9SF4Q92544 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
TM9SF4Q92544 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
TM9SF4Q92544 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
TM9SF4Q92544 AHCYP4-201ENST00000419201 1315 ntBASIC13.49□□□□□ -0.25
TM9SF4Q92544 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
TM9SF4Q92544 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
TM9SF4Q92544 AC090505.1-201ENST00000430515 1834 ntBASIC13.49□□□□□ -0.25
TM9SF4Q92544 AC012617.1-204ENST00000586340 2305 ntBASIC13.49□□□□□ -0.25
TM9SF4Q92544 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
TM9SF4Q92544 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC13.49□□□□□ -0.25
TM9SF4Q92544 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
TM9SF4Q92544 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
TM9SF4Q92544 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
TM9SF4Q92544 HPGD-203ENST00000422112 805 ntTSL 2 BASIC13.49□□□□□ -0.25
TM9SF4Q92544 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC13.49□□□□□ -0.25
TM9SF4Q92544 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
TM9SF4Q92544 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC13.49□□□□□ -0.25
TM9SF4Q92544 IQSEC3P1-201ENST00000538799 536 ntBASIC13.49□□□□□ -0.25
TM9SF4Q92544 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
TM9SF4Q92544 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC13.49□□□□□ -0.25
TM9SF4Q92544 MIR3188-201ENST00000583494 85 ntBASIC13.49□□□□□ -0.25
TM9SF4Q92544 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
TM9SF4Q92544 AL157813.1-201ENST00000612996 587 ntBASIC13.49□□□□□ -0.25
TM9SF4Q92544 MVK-217ENST00000639206 367 ntTSL 5 BASIC13.49□□□□□ -0.25
TM9SF4Q92544 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC13.49□□□□□ -0.25
TM9SF4Q92544 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
TM9SF4Q92544 AC015802.6-201ENST00000640006 5654 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
TM9SF4Q92544 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
TM9SF4Q92544 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
TM9SF4Q92544 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
TM9SF4Q92544 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC13.49□□□□□ -0.25
TM9SF4Q92544 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
TM9SF4Q92544 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
TM9SF4Q92544 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
TM9SF4Q92544 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
TM9SF4Q92544 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
TM9SF4Q92544 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
TM9SF4Q92544 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC13.49□□□□□ -0.25
TM9SF4Q92544 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
TM9SF4Q92544 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
TM9SF4Q92544 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
TM9SF4Q92544 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
TM9SF4Q92544 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
TM9SF4Q92544 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
TM9SF4Q92544 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
TM9SF4Q92544 SLC23A1-201ENST00000348729 2299 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
TM9SF4Q92544 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
TM9SF4Q92544 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC13.48□□□□□ -0.25
TM9SF4Q92544 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC13.48□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 64.4 ms