Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
VPS8Q8N3P4 TUBA1B-202ENST00000336023 1627 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VPS8Q8N3P4 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC21.72■■□□□ 1.07
VPS8Q8N3P4 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
VPS8Q8N3P4 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
VPS8Q8N3P4 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VPS8Q8N3P4 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VPS8Q8N3P4 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC21.72■■□□□ 1.07
VPS8Q8N3P4 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
VPS8Q8N3P4 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VPS8Q8N3P4 AL391647.1-201ENST00000395664 511 ntBASIC21.72■■□□□ 1.07
VPS8Q8N3P4 AL365500.1-201ENST00000442783 868 ntTSL 3 BASIC21.72■■□□□ 1.07
VPS8Q8N3P4 TLN2-202ENST00000472902 2116 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
VPS8Q8N3P4 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC21.72■■□□□ 1.07
VPS8Q8N3P4 PRSS55-203ENST00000522210 1005 ntTSL 2 BASIC21.72■■□□□ 1.07
VPS8Q8N3P4 YPEL4-209ENST00000534711 889 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
VPS8Q8N3P4 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC21.72■■□□□ 1.07
VPS8Q8N3P4 AC005323.2-202ENST00000581304 493 ntTSL 3 BASIC21.72■■□□□ 1.07
VPS8Q8N3P4 COQ4-204ENST00000608951 781 ntTSL 2 BASIC21.72■■□□□ 1.07
VPS8Q8N3P4 AP000356.3-203ENST00000614808 601 ntTSL 3 BASIC21.72■■□□□ 1.07
VPS8Q8N3P4 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC21.71■■□□□ 1.07
VPS8Q8N3P4 TMEM254-213ENST00000613758 2154 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
VPS8Q8N3P4 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS8Q8N3P4 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS8Q8N3P4 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
VPS8Q8N3P4 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC21.71■■□□□ 1.07
VPS8Q8N3P4 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS8Q8N3P4 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC21.71■■□□□ 1.07
VPS8Q8N3P4 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS8Q8N3P4 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC21.71■■□□□ 1.07
VPS8Q8N3P4 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS8Q8N3P4 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
VPS8Q8N3P4 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS8Q8N3P4 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS8Q8N3P4 AC005840.4-201ENST00000541242 2494 ntBASIC21.71■■□□□ 1.07
VPS8Q8N3P4 HSPA8-221ENST00000533540 1826 ntTSL 5 BASIC21.71■■□□□ 1.07
VPS8Q8N3P4 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS8Q8N3P4 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
VPS8Q8N3P4 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS8Q8N3P4 FAM213A-204ENST00000372188 829 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
VPS8Q8N3P4 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS8Q8N3P4 SEPT7-AS1-201ENST00000412856 587 ntTSL 4 BASIC21.71■■□□□ 1.07
VPS8Q8N3P4 AP003398.1-201ENST00000531124 318 ntBASIC21.71■■□□□ 1.07
VPS8Q8N3P4 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC21.71■■□□□ 1.07
VPS8Q8N3P4 MIR4750-201ENST00000584564 56 ntBASIC21.71■■□□□ 1.07
VPS8Q8N3P4 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC21.71■■□□□ 1.07
VPS8Q8N3P4 LINC00969-321ENST00000629990 806 ntTSL 5 BASIC21.71■■□□□ 1.07
VPS8Q8N3P4 AL137793.2-201ENST00000632635 659 ntTSL 3 BASIC21.71■■□□□ 1.07
VPS8Q8N3P4 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
VPS8Q8N3P4 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC21.71■■□□□ 1.07
VPS8Q8N3P4 HOXC4-202ENST00000430889 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS8Q8N3P4 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
VPS8Q8N3P4 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC21.7■■□□□ 1.07
VPS8Q8N3P4 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
VPS8Q8N3P4 RIN2-202ENST00000440354 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS8Q8N3P4 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC21.7■■□□□ 1.06
VPS8Q8N3P4 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS8Q8N3P4 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
VPS8Q8N3P4 TRAIP-201ENST00000331456 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS8Q8N3P4 TBC1D3E-201ENST00000621587 2076 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS8Q8N3P4 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC21.7■■□□□ 1.06
VPS8Q8N3P4 POPDC2-201ENST00000264231 1679 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
VPS8Q8N3P4 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS8Q8N3P4 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
VPS8Q8N3P4 POLR2G-201ENST00000301788 827 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS8Q8N3P4 SFMBT2-202ENST00000379711 692 ntTSL 5 BASIC21.7■■□□□ 1.06
VPS8Q8N3P4 EIF4E2-205ENST00000409394 604 ntTSL 3 BASIC21.7■■□□□ 1.06
VPS8Q8N3P4 FOXP4-AS1-202ENST00000432751 409 ntTSL 2 BASIC21.7■■□□□ 1.06
VPS8Q8N3P4 AP001057.1-201ENST00000437557 799 ntTSL 5 BASIC21.7■■□□□ 1.06
VPS8Q8N3P4 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
VPS8Q8N3P4 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC21.7■■□□□ 1.06
VPS8Q8N3P4 NAA38-204ENST00000575208 529 ntTSL 3 BASIC21.7■■□□□ 1.06
VPS8Q8N3P4 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
VPS8Q8N3P4 RNF103-CHMP3-202ENST00000604011 1135 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
VPS8Q8N3P4 SARS-201ENST00000234677 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS8Q8N3P4 GOLGA8IP-201ENST00000340249 1899 ntTSL 2 BASIC21.7■■□□□ 1.06
VPS8Q8N3P4 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC21.7■■□□□ 1.06
VPS8Q8N3P4 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS8Q8N3P4 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS8Q8N3P4 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
VPS8Q8N3P4 KCNIP2-203ENST00000348850 2089 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
VPS8Q8N3P4 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VPS8Q8N3P4 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
VPS8Q8N3P4 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC21.69■■□□□ 1.06
VPS8Q8N3P4 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
VPS8Q8N3P4 LINC01002-209ENST00000631858 1761 ntTSL 2 BASIC21.69■■□□□ 1.06
VPS8Q8N3P4 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC21.69■■□□□ 1.06
VPS8Q8N3P4 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
VPS8Q8N3P4 ETNPPL-202ENST00000411864 2028 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VPS8Q8N3P4 FAM156A-208ENST00000615092 2098 ntAPPRIS P2 TSL 5 BASIC21.69■■□□□ 1.06
VPS8Q8N3P4 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
VPS8Q8N3P4 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
VPS8Q8N3P4 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC21.69■■□□□ 1.06
VPS8Q8N3P4 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC21.69■■□□□ 1.06
VPS8Q8N3P4 AC010976.2-201ENST00000609697 852 ntBASIC21.69■■□□□ 1.06
VPS8Q8N3P4 AC026336.4-201ENST00000624565 1050 ntBASIC21.69■■□□□ 1.06
VPS8Q8N3P4 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC21.69■■□□□ 1.06
VPS8Q8N3P4 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VPS8Q8N3P4 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
VPS8Q8N3P4 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 62.4 ms