Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 CPNE5-201ENST00000244751 3897 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 UNC5CL-201ENST00000244565 3136 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 AC005394.2-201ENST00000592347 3113 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 SKA3-202ENST00000314759 2919 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 ACTN1-205ENST00000538545 2813 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 ZYG11A-201ENST00000371528 4469 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 CYTH1-215ENST00000591455 3286 ntAPPRIS P3 TSL 2 BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 TRIM40-207ENST00000396581 2086 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 OTUD4-201ENST00000447906 3829 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 BCL2L1-201ENST00000307677 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 KIF3C-202ENST00000405914 3180 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 DLGAP1-AS1-201ENST00000317114 1966 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 GRIP2-204ENST00000619221 7977 ntAPPRIS P5 TSL 5 BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 PLOD2-202ENST00000360060 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 SLC4A2-201ENST00000392826 3947 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 ABCB7-203ENST00000373394 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 LAP3P2-201ENST00000454686 1454 ntBASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 HNF1A-201ENST00000257555 3442 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 ADGRA1-201ENST00000392606 3438 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 SFI1-229ENST00000540643 4226 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 STX16-207ENST00000371141 4937 ntAPPRIS P3 TSL 2 BASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 CCNE2-205ENST00000520509 3330 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 URGCP-207ENST00000453200 4042 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 NOX5-201ENST00000260364 8592 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 MIR1233-2-201ENST00000408138 82 ntBASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 MIR1233-1-201ENST00000408722 82 ntBASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 BAATP1-201ENST00000412284 1225 ntBASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 CHCHD2P3-201ENST00000603038 451 ntBASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 PAX8-204ENST00000397647 3633 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 GOLGA8IP-201ENST00000340249 1899 ntTSL 2 BASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 ARAF-203ENST00000377045 2458 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 BCAM-211ENST00000611077 3430 ntTSL 5 BASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 SDR9C7-201ENST00000293502 1765 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 NCS1-201ENST00000372398 4991 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 ASB2-201ENST00000315988 2743 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 OSBPL9-201ENST00000361556 2721 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 CNTD1-204ENST00000588408 2369 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 MEP1A-201ENST00000230588 2892 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 SERBP1-204ENST00000370995 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 AL445209.1-201ENST00000607269 3491 ntBASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 KRT18P28-201ENST00000453838 1332 ntBASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 AC134312.5-201ENST00000568031 1313 ntBASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 ENDOV-207ENST00000518907 2418 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 AMER2-201ENST00000357816 10055 ntTSL 2 BASIC13.88□□□□□ -0.19
CCDC28BQ9BUN5 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 MSTO2P-201ENST00000314835 1709 ntBASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 FGFR1-207ENST00000397103 2953 ntTSL 5 BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 RAPGEF1-201ENST00000372189 6085 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 HPS1-215ENST00000613394 3714 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 COL16A1-202ENST00000373668 3643 ntTSL 2 BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 ANKRD30BP2-201ENST00000435744 1610 ntBASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 CPEB4-208ENST00000520867 2607 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 AC011700.1-201ENST00000610409 2627 ntBASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 MAP7D2-201ENST00000379643 3918 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 RPA2-203ENST00000373912 1752 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 REXO1L6P-201ENST00000603433 1515 ntBASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 PON3-203ENST00000427422 894 ntTSL 3 BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC13.87□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms