Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 UQCC2-201ENST00000374214 432 ntTSL 5 BASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 IGHV5-51-201ENST00000390626 410 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 AC103592.1-201ENST00000394513 664 ntBASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 PPM1N-205ENST00000401705 771 ntTSL 3 BASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 CFAP36-203ENST00000403007 759 ntTSL 2 BASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 RPL3P2-204ENST00000413027 1203 ntBASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 AL158166.1-201ENST00000433110 371 ntTSL 2 BASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 AL356218.1-201ENST00000450864 353 ntTSL 3 BASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 STK24P1-201ENST00000455035 1291 ntBASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 AC244197.1-201ENST00000456494 951 ntBASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 AC025186.1-201ENST00000478174 870 ntBASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 AC090136.2-201ENST00000517809 420 ntBASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 AC012158.2-201ENST00000536546 354 ntBASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 LOXL1-AS1-207ENST00000565689 735 ntTSL 3 BASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 SHMT1P1-201ENST00000419974 1312 ntBASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 PSMC4-202ENST00000455878 1333 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 AC023908.3-201ENST00000564211 3047 ntBASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 C11orf49-203ENST00000378618 1166 ntTSL 5 BASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 TBC1D27-202ENST00000424239 1573 ntBASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 FAU-202ENST00000434372 533 ntTSL 2 BASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 DDX39AP1-201ENST00000445147 1181 ntBASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 LRRC75A-AS1-213ENST00000484836 821 ntTSL 2 BASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 KRT18P37-201ENST00000520711 1282 ntBASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 IMMP1L-202ENST00000526776 469 ntTSL 3 BASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 TUBB3-208ENST00000555576 572 ntTSL 4 BASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 AC138761.6-201ENST00000583997 1423 ntBASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 AP005212.2-201ENST00000584979 510 ntBASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
NPAS3Q8IXF0 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NPAS3Q8IXF0 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC14.61□□□□□ -0.07
NPAS3Q8IXF0 RBFOX3-203ENST00000580155 1519 ntAPPRIS P2 TSL 2 BASIC14.61□□□□□ -0.07
NPAS3Q8IXF0 GNAO1-205ENST00000563661 1351 ntTSL 2 BASIC14.61□□□□□ -0.07
NPAS3Q8IXF0 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC14.61□□□□□ -0.07
NPAS3Q8IXF0 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NPAS3Q8IXF0 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NPAS3Q8IXF0 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
NPAS3Q8IXF0 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
NPAS3Q8IXF0 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC14.61□□□□□ -0.07
NPAS3Q8IXF0 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NPAS3Q8IXF0 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
NPAS3Q8IXF0 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
NPAS3Q8IXF0 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NPAS3Q8IXF0 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
NPAS3Q8IXF0 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC14.61□□□□□ -0.07
NPAS3Q8IXF0 UBOX5-AS1-201ENST00000446537 1792 ntTSL 2 BASIC14.61□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms