Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC13.19□□□□□ -0.3
RNF4P78317 BAX-205ENST00000391871 687 ntTSL 5 BASIC13.19□□□□□ -0.3
RNF4P78317 HLA-DQB2-229ENST00000411527 1059 ntBASIC13.19□□□□□ -0.3
RNF4P78317 PARVG-202ENST00000415224 999 ntTSL 2 BASIC13.19□□□□□ -0.3
RNF4P78317 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC13.19□□□□□ -0.3
RNF4P78317 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC13.19□□□□□ -0.3
RNF4P78317 DUTP3-201ENST00000450025 415 ntBASIC13.19□□□□□ -0.3
RNF4P78317 AC234782.1-201ENST00000451950 919 ntBASIC13.19□□□□□ -0.3
RNF4P78317 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RNF4P78317 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC13.19□□□□□ -0.3
RNF4P78317 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RNF4P78317 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC13.19□□□□□ -0.3
RNF4P78317 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC13.19□□□□□ -0.3
RNF4P78317 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC13.19□□□□□ -0.3
RNF4P78317 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC13.19□□□□□ -0.3
RNF4P78317 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC13.19□□□□□ -0.3
RNF4P78317 AC068587.10-201ENST00000641210 219 ntBASIC13.19□□□□□ -0.3
RNF4P78317 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
RNF4P78317 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
RNF4P78317 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RNF4P78317 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RNF4P78317 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RNF4P78317 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RNF4P78317 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
RNF4P78317 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
RNF4P78317 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RNF4P78317 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RNF4P78317 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
RNF4P78317 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
RNF4P78317 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
RNF4P78317 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RNF4P78317 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
RNF4P78317 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RNF4P78317 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RNF4P78317 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
RNF4P78317 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RNF4P78317 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RNF4P78317 NUDT3-201ENST00000607016 9905 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RNF4P78317 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC13.18□□□□□ -0.3
RNF4P78317 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RNF4P78317 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
RNF4P78317 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC13.18□□□□□ -0.3
RNF4P78317 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RNF4P78317 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC13.18□□□□□ -0.3
RNF4P78317 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC13.18□□□□□ -0.3
RNF4P78317 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC13.18□□□□□ -0.3
RNF4P78317 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
RNF4P78317 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC13.18□□□□□ -0.3
RNF4P78317 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC13.18□□□□□ -0.3
RNF4P78317 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RNF4P78317 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC13.18□□□□□ -0.3
RNF4P78317 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC13.18□□□□□ -0.3
RNF4P78317 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC13.18□□□□□ -0.3
RNF4P78317 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RNF4P78317 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RNF4P78317 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RNF4P78317 AL583805.1-201ENST00000391389 531 ntBASIC13.18□□□□□ -0.3
RNF4P78317 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RNF4P78317 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC13.18□□□□□ -0.3
RNF4P78317 AC073869.2-201ENST00000417338 1026 ntBASIC13.18□□□□□ -0.3
RNF4P78317 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC13.18□□□□□ -0.3
RNF4P78317 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RNF4P78317 RPL8P2-201ENST00000430538 502 ntBASIC13.18□□□□□ -0.3
RNF4P78317 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC13.18□□□□□ -0.3
RNF4P78317 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RNF4P78317 CEP164P1-201ENST00000455142 418 ntBASIC13.18□□□□□ -0.3
RNF4P78317 AP000358.1-201ENST00000456260 156 ntBASIC13.18□□□□□ -0.3
RNF4P78317 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RNF4P78317 IGLV3-15-201ENST00000518356 244 ntBASIC13.18□□□□□ -0.3
RNF4P78317 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC13.18□□□□□ -0.3
RNF4P78317 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC13.18□□□□□ -0.3
RNF4P78317 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RNF4P78317 ELP5-212ENST00000574255 671 ntTSL 2 BASIC13.18□□□□□ -0.3
RNF4P78317 MIR3677-201ENST00000578964 60 ntBASIC13.18□□□□□ -0.3
RNF4P78317 MIR3907-201ENST00000579424 151 ntBASIC13.18□□□□□ -0.3
RNF4P78317 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC13.18□□□□□ -0.3
RNF4P78317 AL133499.1-201ENST00000596207 608 ntBASIC13.18□□□□□ -0.3
RNF4P78317 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC13.18□□□□□ -0.3
RNF4P78317 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC13.18□□□□□ -0.3
RNF4P78317 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
RNF4P78317 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC13.18□□□□□ -0.3
RNF4P78317 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RNF4P78317 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
RNF4P78317 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC13.18□□□□□ -0.3
RNF4P78317 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
RNF4P78317 MARK2P16-201ENST00000605714 1723 ntBASIC13.18□□□□□ -0.3
RNF4P78317 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC13.18□□□□□ -0.3
RNF4P78317 SLC4A5-201ENST00000346834 6233 ntAPPRIS P4 TSL 5 BASIC13.18□□□□□ -0.3
RNF4P78317 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RNF4P78317 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC13.18□□□□□ -0.3
RNF4P78317 CAP2P1-201ENST00000557743 1390 ntBASIC13.18□□□□□ -0.3
RNF4P78317 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RNF4P78317 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC13.18□□□□□ -0.3
RNF4P78317 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RNF4P78317 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
RNF4P78317 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
RNF4P78317 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
RNF4P78317 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNF4P78317 AC126335.2-201ENST00000623362 4637 ntBASIC13.17□□□□□ -0.3
RNF4P78317 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms