Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC10.93□□□□□ -0.66
HLA-DMBP28068 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC10.93□□□□□ -0.66
HLA-DMBP28068 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC10.93□□□□□ -0.66
HLA-DMBP28068 BAP1-211ENST00000615113 489 ntBASIC10.93□□□□□ -0.66
HLA-DMBP28068 AL136301.1-201ENST00000615830 422 ntBASIC10.93□□□□□ -0.66
HLA-DMBP28068 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC10.93□□□□□ -0.66
HLA-DMBP28068 AC006453.4-201ENST00000636949 1252 ntBASIC10.93□□□□□ -0.66
HLA-DMBP28068 SETD1B-202ENST00000542440 8185 ntAPPRIS P2 TSL 5 BASIC10.93□□□□□ -0.66
HLA-DMBP28068 METAP1D-201ENST00000315796 3419 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
HLA-DMBP28068 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
HLA-DMBP28068 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
HLA-DMBP28068 GSE1-203ENST00000405402 4366 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
HLA-DMBP28068 MAP7-202ENST00000432797 4375 ntAPPRIS ALT2 TSL 2 BASIC10.93□□□□□ -0.66
HLA-DMBP28068 PFAS-201ENST00000314666 5371 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
HLA-DMBP28068 MCF2L-204ENST00000375608 3648 ntTSL 5 BASIC10.93□□□□□ -0.66
HLA-DMBP28068 MARK1-201ENST00000366917 2946 ntAPPRIS P3 TSL 1 (best) BASIC10.93□□□□□ -0.66
HLA-DMBP28068 SAMD15-201ENST00000216471 2564 ntAPPRIS P1 TSL 2 BASIC10.93□□□□□ -0.66
HLA-DMBP28068 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC10.93□□□□□ -0.66
HLA-DMBP28068 GLRX3-202ENST00000368644 3827 ntAPPRIS P1 TSL 2 BASIC10.93□□□□□ -0.66
HLA-DMBP28068 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC10.93□□□□□ -0.66
HLA-DMBP28068 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
HLA-DMBP28068 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
HLA-DMBP28068 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC10.93□□□□□ -0.66
HLA-DMBP28068 ANKRD30B-202ENST00000358984 4359 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
HLA-DMBP28068 UACA-201ENST00000322954 6939 ntAPPRIS P3 TSL 1 (best) BASIC10.93□□□□□ -0.66
HLA-DMBP28068 SYK-203ENST00000375751 4936 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
HLA-DMBP28068 AGAP12P-201ENST00000585227 2359 ntBASIC10.92□□□□□ -0.66
HLA-DMBP28068 SGMS1-203ENST00000429490 3634 ntTSL 5 BASIC10.92□□□□□ -0.66
HLA-DMBP28068 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC10.92□□□□□ -0.66
HLA-DMBP28068 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
HLA-DMBP28068 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC10.92□□□□□ -0.66
HLA-DMBP28068 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
HLA-DMBP28068 TGFBR3-204ENST00000465892 2908 ntAPPRIS ALT1 TSL 1 (best) BASIC10.92□□□□□ -0.66
HLA-DMBP28068 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
HLA-DMBP28068 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC10.92□□□□□ -0.66
HLA-DMBP28068 LINC02346-201ENST00000383019 1967 ntTSL 2 BASIC10.92□□□□□ -0.66
HLA-DMBP28068 AL139193.2-201ENST00000553712 1954 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
HLA-DMBP28068 SPHK2-206ENST00000598088 2866 ntAPPRIS P3 TSL 1 (best) BASIC10.92□□□□□ -0.66
HLA-DMBP28068 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC10.92□□□□□ -0.66
HLA-DMBP28068 ACADM-218ENST00000541113 2535 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
HLA-DMBP28068 AL512306.2-201ENST00000444037 2219 ntTSL 2 BASIC10.92□□□□□ -0.66
HLA-DMBP28068 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
HLA-DMBP28068 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
HLA-DMBP28068 PRPSAP1-206ENST00000446526 3660 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
HLA-DMBP28068 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
HLA-DMBP28068 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC10.92□□□□□ -0.66
HLA-DMBP28068 TRIM4-201ENST00000349062 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
HLA-DMBP28068 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
HLA-DMBP28068 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC10.92□□□□□ -0.66
HLA-DMBP28068 CYP26B1-201ENST00000001146 4732 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
HLA-DMBP28068 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
HLA-DMBP28068 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC10.92□□□□□ -0.66
HLA-DMBP28068 RPF1-202ENST00000370656 724 ntTSL 2 BASIC10.92□□□□□ -0.66
HLA-DMBP28068 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC10.92□□□□□ -0.66
HLA-DMBP28068 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC10.92□□□□□ -0.66
HLA-DMBP28068 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC10.92□□□□□ -0.66
HLA-DMBP28068 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
HLA-DMBP28068 HLA-V-201ENST00000429037 534 ntBASIC10.92□□□□□ -0.66
HLA-DMBP28068 RGS5-214ENST00000429865 754 ntTSL 3 BASIC10.92□□□□□ -0.66
HLA-DMBP28068 VPS52-212ENST00000445902 2960 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
HLA-DMBP28068 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC10.92□□□□□ -0.66
HLA-DMBP28068 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC10.92□□□□□ -0.66
HLA-DMBP28068 AP000812.2-201ENST00000538934 718 ntBASIC10.92□□□□□ -0.66
HLA-DMBP28068 AC079316.1-201ENST00000548397 411 ntBASIC10.92□□□□□ -0.66
HLA-DMBP28068 KRT90P-201ENST00000549264 1064 ntBASIC10.92□□□□□ -0.66
HLA-DMBP28068 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC10.92□□□□□ -0.66
HLA-DMBP28068 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC10.92□□□□□ -0.66
HLA-DMBP28068 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC10.92□□□□□ -0.66
HLA-DMBP28068 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC10.92□□□□□ -0.66
HLA-DMBP28068 PPY2P-201ENST00000582808 702 ntBASIC10.92□□□□□ -0.66
HLA-DMBP28068 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
HLA-DMBP28068 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC10.92□□□□□ -0.66
HLA-DMBP28068 LARP4-220ENST00000615080 856 ntTSL 5 BASIC10.92□□□□□ -0.66
HLA-DMBP28068 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC10.92□□□□□ -0.66
HLA-DMBP28068 CRELD1-202ENST00000383811 2696 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
HLA-DMBP28068 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC10.92□□□□□ -0.66
HLA-DMBP28068 TMBIM7P-202ENST00000641474 1516 ntBASIC10.92□□□□□ -0.66
HLA-DMBP28068 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
HLA-DMBP28068 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
HLA-DMBP28068 CASKIN2-202ENST00000433559 3950 ntTSL 2 BASIC10.92□□□□□ -0.66
HLA-DMBP28068 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC10.92□□□□□ -0.66
HLA-DMBP28068 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
HLA-DMBP28068 AP001999.1-201ENST00000513405 3684 ntTSL 2 BASIC10.92□□□□□ -0.66
HLA-DMBP28068 UROC1-201ENST00000290868 3149 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
HLA-DMBP28068 APOB-202ENST00000399256 3128 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
HLA-DMBP28068 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC10.92□□□□□ -0.66
HLA-DMBP28068 BTRC-203ENST00000393441 6084 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
HLA-DMBP28068 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC10.92□□□□□ -0.66
HLA-DMBP28068 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC10.92□□□□□ -0.66
HLA-DMBP28068 C16orf82-201ENST00000418886 2268 ntAPPRIS ALT2 BASIC10.92□□□□□ -0.66
HLA-DMBP28068 SGTB-201ENST00000381007 5469 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
HLA-DMBP28068 NCLP1-201ENST00000445357 1963 ntBASIC10.92□□□□□ -0.66
HLA-DMBP28068 SCNN1A-215ENST00000540037 3040 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
HLA-DMBP28068 E2F3P2-201ENST00000447755 1422 ntBASIC10.92□□□□□ -0.66
HLA-DMBP28068 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC10.92□□□□□ -0.66
HLA-DMBP28068 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC10.92□□□□□ -0.66
HLA-DMBP28068 FOXM1-210ENST00000627656 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC10.92□□□□□ -0.66
HLA-DMBP28068 CYP20A1-201ENST00000356079 1949 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
HLA-DMBP28068 LARP4-201ENST00000293618 6296 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
HLA-DMBP28068 ZDHHC6-202ENST00000369405 2170 ntAPPRIS P3 TSL 1 (best) BASIC10.92□□□□□ -0.66
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms